Lates calcarifer (barramundi perch): 108893337
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Entry
108893337 CDS
T04895
Name
(RefSeq) cytotoxic and regulatory T-cell molecule isoform X1
KO
K16361
cytotoxic and regulatory T-cell molecule
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108893337
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108893337
04090 CD molecules [BR:
lcf04090
]
108893337
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Nectin family
108893337
CD molecules [BR:
lcf04090
]
Proteins
108893337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
V-set
Ig_2
C2-set_2
C2-set_3
V-set_CD47
VERL_C
TMEM62_C
Hum_adeno_E3A
DUF5555
DUF4834
Orf78
Motif
Other DBs
NCBI-GeneID:
108893337
NCBI-ProteinID:
XP_018546812
UniProt:
A0AAJ7VCN0
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All DBs
Position
LG20:4440624..4446756
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AA seq
450 aa
AA seq
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MELKLQLGVVMLLIQVSHALWQRVTVRKGQTLILSCPITNAHKTNVDWKTPEGYVMFFNH
NRALRNKRYSIIKLSESEFTISISNVTFKDGGNYTCSQYDHHTTERKVEVTVFDTPKMTV
TKHEGKFIIKCTAEGNHHPPQISWKLDSGPEILTHAQVQHEDKKYISMAMLDVQSVENRV
TVKCLLRHPALVSQPLMNFVKIGRDSTKSYRTTTTSSPTAQPERSTGVLGTSASGYTHGR
TTGYLATRDVTGPSPESSTTSPVVPSNQPLSSTEPETVTAPTRSPVTSSGWTFVSETTGE
LSHNTTEGNRTGNVNDPRIQTGSRGSSSLLVFLVTFLIFCLLVVVIFFAIKLRRAHMAWK
RVFIVTENEDSDPSEESSKSKSSQEEKNVQGQRRRGLFNTAFTQYIVEEPAVITSVINTT
AVEVENEKQISQPQALAHTSAKCDIKETEL
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaactgaagctgcagctcggcgtcgtcatgcttctcatacaggtttcgcatgcattg
tggcagcgtgtgactgtgaggaaaggtcagactctcatcttaagttgccccatcactaat
gctcacaagaccaatgtggactggaagactccagaaggatatgttatgttcttcaatcac
aatagagctttaaggaacaaacgctacagtatcatcaaactgtctgagtcagaattcacc
atcagtatttccaatgtcaccttcaaagatggaggcaactacacatgctctcagtatgat
caccacacgacagagaggaaagtggaagtgacagtgtttgatacccccaagatgacagta
acgaagcatgaaggaaagtttataataaaatgcactgctgaggggaaccaccatcctccc
cagatctcctggaaattggacagtgggcctgaaattctcactcatgcccaagtccaacac
gaagacaaaaaatatatctctatggcgatgttagatgttcagtcagtggagaacagagtc
actgtgaaatgccttcttcgccacccagcactggtctcacaacctctgatgaactttgtc
aaaattggacgagactcaacaaaatcctaccgcacaactacgaccagttcacccacagct
caacctgaaaggtcaacaggggtactaggaacatcagccagtggttacacacatgggaga
acaacagggtacctcgcaaccagagatgtgactggtccttcaccagagagttctaccacg
tcaccagttgttccctccaatcaaccactttcctccactgagccagagacagtaacagca
cccactaggtctcctgttacatctagtggctggacatttgtgtctgagacaacaggggaa
ctatcccataacaccacggagggaaacagaacaggaaacgttaatgatccaaggattcaa
acaggaagtagaggaagttcatctttactggtgttcctggtgacattcctgatcttctgt
cttctggtggtggtaattttttttgccatcaagctcaggagagcacacatggcctggaag
agagtttttattgttacagaaaatgaagactctgatccatcagaggagagcagtaaatca
aaatcgagccaggaggagaagaacgttcaaggacaaaggcgaagagggcttttcaacaca
gcattcacacagtacattgttgaagagccagcagtgatcacttcagtgataaacacgaca
gcagtagaagttgaaaatgaaaagcagatttctcaacctcaagccctggcacacacctca
gccaaatgtgacataaaggagacagagctgtaa
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