Lates calcarifer (barramundi perch): 108893353
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Entry
108893353 CDS
T04895
Name
(RefSeq) rab5 GDP/GTP exchange factor
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108893353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108893353
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
108893353
Protein recycling
Other Rab GTPase associated proteins
108893353
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Motif
Other DBs
NCBI-GeneID:
108893353
NCBI-ProteinID:
XP_018546839
UniProt:
A0A4W6DKC3
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Position
LG20:15443736..15452686
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AA seq
511 aa
AA seq
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MSQRTERRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEK
LQREEEAAYASSHGVQTQSHAQSAAPHPGHASLGPFSKFEEKKTNEKTRKVTTVKKFFSP
SSRTAPKKETQEGKTPSPSISRHASFDTDQVSKDFVDFLKNLQKPGREIHKQCRAFIVNM
SSKKDLSADELSECVQDFYQSMADRLMSHFKGSSDSVEQVMDQVEKYIMTRLYKSVFCPE
TTDDEKKDLATQNRIRALHWVTIQMLCVSMDEEIPEVSENVVKAITDIIEMDSKKVPRDK
LGCITRCSKHIFSAIRITKNEPASADDFLPALIYIVLKANPPRLQSNIQYITRFCNPSRL
MTGEDGYYFTNLCCAAAFIEKLDAQSLNLSPEEFERYMSGQASPRLNSSEGDWPDAGLAH
GVPAANPVLAQVNRNLELLSSLSSKQERLMEAAQSLQADLLSWPETVKREVNDILEKYPL
EILSCTVSAIDANNMDNDNLPPPLTPQVFAG
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaacggaccgagcggcgggggatacacgtggaccagtcagacctgctgtgcaaa
aagggatgcggttactacggcaacgcggcatggcagggcctgtgctccaagtgctggagg
gaggagtaccagcgggtacggcagaaacagatccaggacgactgggccttggcagaaaag
ttgcaacgagaggaggaggcagcgtacgccagtagtcatggagtgcagacccagtcccat
gcccagtctgcagcaccacacccaggacacgcctctctaggacccttttccaagttcgag
gagaagaaaaccaatgagaagacacgaaaagtgaccactgttaagaagttcttcagccct
tcgtcacgcactgctcccaaaaaagaaactcaagagggcaagacacccagtccgtccatc
agccgccatgccagcttcgacaccgaccaagtgtccaaggactttgtggatttcctgaaa
aacctccagaagcctggtcgggagatccataagcagtgtcgggccttcatcgtgaatatg
tcaagcaagaaggatctcagtgctgacgaactttcagagtgcgttcaggatttctaccag
agcatggctgaccgcttgatgagtcactttaaaggctcttcagattctgtggagcaggtg
atggaccaagtggaaaagtacatcatgactcgtctgtataagagcgttttctgtccagaa
accaccgatgatgagaagaaggatttggccacacagaacaggataagggctttacactgg
gtgaccatccagatgctctgtgtgtctatggatgaagaaatccctgaagtctctgagaat
gtggtcaaagcaataacagatatcattgagatggactcgaagaaagttccccgggacaaa
cttgggtgcatcacgcgctgcagtaaacacatcttcagcgccattaggatcaccaagaat
gagccggcgtccgctgacgactttctccctgcgctcatttatatcgtgctcaaggctaac
cctccacgacttcagtccaacatccagtacatcacccgcttctgtaaccccagcaggctg
atgaccggcgaggacggatactatttcaccaacctgtgctgtgcagcagccttcattgag
aagttggatgctcagtctctaaatctttcccccgaggagtttgaacgctacatgtcagga
caagcctcaccacgactcaatagctcagagggcgactggcccgatgctggcttggcacat
ggtgtgcctgctgccaacccggtcctggctcaggtcaatcgcaatctggagctgctgtcg
agcctcagcagcaagcaggagaggctgatggaggctgctcagagcctgcaagctgacctc
ctttcctggcccgagaccgtaaagcgggaggtgaatgacatcctggagaaataccctctg
gagattctgtcctgcacagtttctgccattgatgccaacaacatggacaacgacaacctg
ccaccacccctcacaccccaggtgttcgctgggtag
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