KEGG   Lates calcarifer (barramundi perch): 108893353
Entry
108893353         CDS       T04895                                 
Name
(RefSeq) rab5 GDP/GTP exchange factor
  KO
K20131  Rab5 GDP/GTP exchange factor
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    108893353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lcf04131]
    108893353
Membrane trafficking [BR:lcf04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab associated proteins
    108893353
 Protein recycling
   Other Rab GTPase associated proteins
    108893353
SSDB
Motif
Pfam: VPS9 DUF5601 zf-A20
Other DBs
NCBI-GeneID: 108893353
NCBI-ProteinID: XP_018546839
UniProt: A0A4W6DKC3
LinkDB
Position
LG20:15443736..15452686
AA seq 511 aa
MSQRTERRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEK
LQREEEAAYASSHGVQTQSHAQSAAPHPGHASLGPFSKFEEKKTNEKTRKVTTVKKFFSP
SSRTAPKKETQEGKTPSPSISRHASFDTDQVSKDFVDFLKNLQKPGREIHKQCRAFIVNM
SSKKDLSADELSECVQDFYQSMADRLMSHFKGSSDSVEQVMDQVEKYIMTRLYKSVFCPE
TTDDEKKDLATQNRIRALHWVTIQMLCVSMDEEIPEVSENVVKAITDIIEMDSKKVPRDK
LGCITRCSKHIFSAIRITKNEPASADDFLPALIYIVLKANPPRLQSNIQYITRFCNPSRL
MTGEDGYYFTNLCCAAAFIEKLDAQSLNLSPEEFERYMSGQASPRLNSSEGDWPDAGLAH
GVPAANPVLAQVNRNLELLSSLSSKQERLMEAAQSLQADLLSWPETVKREVNDILEKYPL
EILSCTVSAIDANNMDNDNLPPPLTPQVFAG
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgagtcaacggaccgagcggcgggggatacacgtggaccagtcagacctgctgtgcaaa
aagggatgcggttactacggcaacgcggcatggcagggcctgtgctccaagtgctggagg
gaggagtaccagcgggtacggcagaaacagatccaggacgactgggccttggcagaaaag
ttgcaacgagaggaggaggcagcgtacgccagtagtcatggagtgcagacccagtcccat
gcccagtctgcagcaccacacccaggacacgcctctctaggacccttttccaagttcgag
gagaagaaaaccaatgagaagacacgaaaagtgaccactgttaagaagttcttcagccct
tcgtcacgcactgctcccaaaaaagaaactcaagagggcaagacacccagtccgtccatc
agccgccatgccagcttcgacaccgaccaagtgtccaaggactttgtggatttcctgaaa
aacctccagaagcctggtcgggagatccataagcagtgtcgggccttcatcgtgaatatg
tcaagcaagaaggatctcagtgctgacgaactttcagagtgcgttcaggatttctaccag
agcatggctgaccgcttgatgagtcactttaaaggctcttcagattctgtggagcaggtg
atggaccaagtggaaaagtacatcatgactcgtctgtataagagcgttttctgtccagaa
accaccgatgatgagaagaaggatttggccacacagaacaggataagggctttacactgg
gtgaccatccagatgctctgtgtgtctatggatgaagaaatccctgaagtctctgagaat
gtggtcaaagcaataacagatatcattgagatggactcgaagaaagttccccgggacaaa
cttgggtgcatcacgcgctgcagtaaacacatcttcagcgccattaggatcaccaagaat
gagccggcgtccgctgacgactttctccctgcgctcatttatatcgtgctcaaggctaac
cctccacgacttcagtccaacatccagtacatcacccgcttctgtaaccccagcaggctg
atgaccggcgaggacggatactatttcaccaacctgtgctgtgcagcagccttcattgag
aagttggatgctcagtctctaaatctttcccccgaggagtttgaacgctacatgtcagga
caagcctcaccacgactcaatagctcagagggcgactggcccgatgctggcttggcacat
ggtgtgcctgctgccaacccggtcctggctcaggtcaatcgcaatctggagctgctgtcg
agcctcagcagcaagcaggagaggctgatggaggctgctcagagcctgcaagctgacctc
ctttcctggcccgagaccgtaaagcgggaggtgaatgacatcctggagaaataccctctg
gagattctgtcctgcacagtttctgccattgatgccaacaacatggacaacgacaacctg
ccaccacccctcacaccccaggtgttcgctgggtag

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