Lates calcarifer (barramundi perch): 108893454
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Entry
108893454 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-11
KO
K06587
integrin alpha 11
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04810
Regulation of actin cytoskeleton
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108893454
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108893454
09142 Cell motility
04820 Cytoskeleton in muscle cells
108893454
04810 Regulation of actin cytoskeleton
108893454
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108893454
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108893454
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_1
VWA_2
FG-GAP_3
Integrin_A_Ig_2
Integrin_alpha
FG-GAP_2
Motif
Other DBs
NCBI-GeneID:
108893454
NCBI-ProteinID:
XP_050929109
UniProt:
A0AAJ8BC81
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All DBs
Position
LG10:complement(2343596..2375368)
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AA seq
1198 aa
AA seq
DB search
MDYYYHLLLLWTCSLLPDLQLCFNFDTKNFKIFAGSKETQFGYTVQQHEAGGRQWLLVGS
PFESTGKQQTGDVYRCPLDNRNSVNCSRLNLGKLSLDNVSERKDKMRLGMTLTSNPKDNS
FVTCGPLWSHECGSSLYSTGICSRVSRNFRLSHTIAPALQRCETFMDIVIVLDGSNSIYP
WYEVQDFLINILHKFYIGPGQTQVGVVQYGSTVVHEFSLGEYETVEEVVEAARSIHQRGG
EETRTALGINVARSEAFKRGGRPGAQKVMIVITDGESHDSPQLVQAVGDSERDNITMYAI
AVLGYYNRRGINPEAFLKEIKFIASDPDEKHFFNVTDESALKDIVDALGERIFTLEGTSS
QGRGFGLQMAQAGFSSHLVKDGILLGAVGAYDWNGAVLKETKHGKVVPPKFSYKDEFPEE
LKNHGAYLGYSVGSLVSSRGSQLYVAGAPRFNHTGKVIVFTLKNTGNLTILHALLGEQIG
SYFGSELLSMDIDGDGQTDILLVAAPMYYSQGWERGKVYIYSVTPQTRFVLQGALEVSDR
SQNSRLGSALAQIPDMNGDGFRELVIGAPLEDDHQGAVYVFYGQDKTIQRQYRQHLSAAG
FSAGLQYFGQSLHGVLDINGDGLVDLAVGALGAAVIIWSRGVVRIQAKLTFEPEKVNIFN
KDCRRGGKEVTCMSVIVCLSLDSRTKTKTKTRTDVAVWYSLVLDERRFPPRAVLDESDRQ
QPRTLFLQTGSQSCQRLGFSVQETPDYGRPIVVFLETGMQNLDEGPVLDPDWPSTLRAEL
PFWNGCEQEDTCVPDLILHSQTDLMNVQQFCSSRDRAAWSLCSHQEVSLGSVSVVETGRR
RMVVYARLENQGENAYGTSIDISTSTNLVFSSLIVKDQSDIQIECFAEDRLASQRFCNLS
APFLKSLSQVSFRLEFEFSRSVFLDHLQVVMGTTSDGEDGYPDDNINDILLPLKYQTDLL
FTRDPNPPRFEIKEDSFSSSSSSWDQSDSSSPTFNLTYYIQNLGIFSVHDLLFRADVWAV
TRRGNQLVNITDYSIEQVAGSHCTLPQLRTTSQVTAEDLSQLSQLNHSNSESMAVQCRLN
LPASREVKVMLRGQLQLPALLAVSFKSLEILTAASIQLDASSPMFLQEDRPVRRIILELR
KEEEYTVPFWIILGSSLGGLLLLALLVLALWKLGFFNRRRRQEEEEQPVANGKAAEEL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggattattattatcaccttctgctgctgtggacctgcagtctgctgccagatcttcag
ctctgtttcaactttgacacgaagaacttcaagatcttcgccggttctaaagaaacccag
tttggatacacagtccagcaacatgaggcaggaggacgccagtggttgctggttggatct
ccctttgaatccacagggaaacaacagactggagatgtgtacagatgtccgctggataac
agaaactctgtcaactgcagccgactcaacctggggaagctttctttggacaacgtgtcc
gagaggaaagacaagatgaggctgggtatgacgctgacctccaaccctaaagacaacagc
tttgtgacctgtggaccactctggtctcatgaatgtggaagctccctgtacagcacagga
atctgctccagagtcagtcgaaacttcagactgtcccacaccatcgcacccgccctgcag
agatgtgagacgttcatggacatcgtgatcgttctggatggttctaactccatctacccc
tggtacgaggtccaggacttcctcatcaacatcctgcacaagttctacattggcccaggt
cagacgcaggttggtgtggttcagtacggctccacggtggttcatgagttcagtctgggt
gagtacgagacggtggaagaggtggtggaggccgccaggagcatccaccagaggggtgga
gaggagacgaggacagcactgggcatcaacgtggcgaggtcggaggcgttcaagcgtggt
ggccgccctggcgctcagaaagtgatgattgtgatcacagatggtgaatctcatgacagt
cctcagctggtgcaggccgttggtgacagcgagagagacaacatcaccatgtacgccatt
gctgttctgggttattacaaccgtcggggaatcaatcctgaagcctttctgaaagaaatc
aagttcattgccagtgatccagatgagaaacacttcttcaatgtgacggatgagtcggca
ctgaaagacattgtggatgctctgggggagaggattttcactttggaaggaaccagcagt
cagggtcgagggttcggcctgcagatggctcaggctggtttctcctcacatttagttaaa
gatggtattctgctcggagcggtcggcgcctacgactggaacggtgcagtgctgaaggaa
actaaacatggaaaagttgttcctccaaaattctcctataaggacgagtttccagaggaa
ctgaagaaccatggagcctatctaggttactcggtgggttcactcgtttcgtctcgtggc
tcacagctctacgtggctggagcgccaaggttcaaccacaccggcaaggtcatcgtcttc
actcttaagaacactggaaacctgaccatccttcacgcactgctgggagagcagattggg
tcatatttcggcagtgagttgttatcgatggacatagatggagatggacagactgacatc
ctcctggtggcagcacccatgtactacagtcaaggctgggagagagggaaagtttacatc
tactctgtcacaccacagacaagatttgtcctgcagggggcactggaggtgtccgaccgc
tctcagaactcccgtctgggttcagcgttggcccagatacctgacatgaatggagacgga
ttcagggagcttgtaattggtgccccactggaggatgaccaccagggggcagtttatgtc
ttttatggccaggacaaaaccatccagcgccagtacagacagcatctctctgcagctggt
ttttctgcaggtctgcagtattttggacaaagtcttcatggtgttctggacattaatgga
gatgggcttgtcgatcttgcagtgggagcactgggagctgccgtcatcatctggtctcgt
ggtgtggtgcggattcaagccaaactgacctttgaacccgagaaggtcaacatcttcaac
aaggactgtcggcgtggagggaaggaggtcacctgcatgtctgttattgtttgtctgagt
ctggactccaggacaaagacaaagacaaagaccaggacagatgttgctgtttggtatagc
ctggtgttggatgagaggcgttttcccccacgagccgttctggacgaatcagaccggcag
cagcccaggactctgtttctgcagactggaagtcagagctgccaacgcctcggcttctct
gtccaggagacaccagattatggacgtcccattgtggtttttctggagacagggatgcag
aacctagatgaagggccagtgttggaccctgactggccgagtaccctgagggcagagctt
cccttctggaatggctgcgagcaggaggatacctgtgttcccgacctcatcctccacagt
caaactgatctcatgaatgttcagcagttctgcagctcgagggaccgagcagcctggtcg
ctctgcagccatcaggaggtgtcgttgggctcagtgtctgtagtggagactgggaggagg
aggatggtggtgtacgctcgactggagaaccagggagagaatgcgtacggaacctccatc
gacatctccacctccaccaacctggtgttctccagcctcattgtcaaggaccaatcagat
attcagattgaatgcttcgctgaggacagactggccagtcagaggttctgtaaccttagt
gctccattcctgaagtcattgtcccaggtatctttccgtctggagtttgagttcagccgc
tctgtcttcctggatcacctacaggttgtcatgggaaccaccagcgacggtgaagacgga
tatccagacgacaacatcaacgacatcctcctccctctgaaataccaaactgacctcctc
ttcaccagagaccctaaccctcctcgttttgaaatcaaagaagactccttctcttcttcc
tcttcatcctgggaccagtcagacagcagctctcccaccttcaacctcacttattacatc
cagaacctgggcatcttctcggtgcatgaccttctgttcagagctgatgtctgggctgtg
accaggcggggaaaccagctggtcaacatcacagactacagcatcgaacaggtagcaggg
tctcactgcacgctgcctcaactcagaacaaccagtcaggttacagctgaagacctgtct
cagctgtcacagctgaaccatagtaacagtgagagcatggcagtccagtgcagactgaac
ctgccggcctccagagaggtgaaggtgatgctcagaggacaactacaacttcctgctctg
ctcgctgtgagcttcaagtctctggagatactgactgctgcctccatccagctggacgcc
tccagtcccatgttcctccaggaggacaggcctgtcagacggataatcctggagctgagg
aaggaggaggaatacaccgtccccttctggatcatactgggcagctcactgggaggtctg
ctgctactggccttactggtgctggctttgtggaagctcggcttcttcaacagacggagg
agacaggaagaggaggaacagcctgtagccaatgggaaggcggcagaggagctataa
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