Lates calcarifer (barramundi perch): 108893490
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Entry
108893490 CDS
T04895
Symbol
tmtops3b
Name
(RefSeq) pinopsin
KO
K04256
c-opsin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108893490 (tmtops3b)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
lcf04030
]
108893490 (tmtops3b)
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108893490 (tmtops3b)
G protein-coupled receptors [BR:
lcf04030
]
Rhodopsin family
Vision
Opsin
108893490 (tmtops3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srv
7TM_GPCR_Srx
7TM_GPCR_Srw
7TM_GPCR_Srsx
CTP_transf_1
ARL6IP6
Motif
Other DBs
NCBI-GeneID:
108893490
NCBI-ProteinID:
XP_018547077
UniProt:
A0A4W6F449
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All DBs
Position
LG20:19860750..19864847
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AA seq
373 aa
AA seq
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MVTLMQHNNNLSTGHGSASDPSAAAGALSRAGHSAAAVVLGFILVLGFFCNFLVLLVFSR
FPGLRTPVSLLLINISASDMFVCMFGTPLSFAASVRGRWLTGSYGCRWYGFSNALFGVVS
LVSLSLLSYERYSVLLCSIQSDSSQYRRARLAVAASWLYSLVWTLPPLLGWSSYGPEGPG
TTCSVQWHQRSAASRSYVGCLFVFCLLLPLLLMLFCYGRILLAVREVNRVNRSSAERKEG
RILLMVVSMVTGYLLCWMPYGIVAMLSSFGRPGVVPPAASLVPSLLAKTSTVLNPVIYVL
LNNQFSRCFLYMIRCSSEAPPTSGHLTPPSDTGVWPHPPDLPTEEQNTAPAMFTSRDQQP
QRTDPVLMVDFQT
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccctcatgcagcataacaacaacctcagcaccgggcacggctccgcgtcggac
cccagcgccgccgcaggcgctctgagccgggccggtcacagcgcagcggccgtggtcctc
gggttcatcctggtcctgggcttcttctgtaacttcctggtgctcctggtgttctcgcgc
ttccccgggctgcggactccggtcagcctactgctgatcaacatcagcgccagcgacatg
ttcgtctgcatgttcgggactcccctcagcttcgcggccagcgtgcgtggcaggtggctg
accgggtcctacgggtgccggtggtacggtttctccaacgcgcttttcggtgtagtatct
ctggtgtctctctctctactgtcctatgagcgctactcagtgttgctctgcagcatccag
tcggactcctctcagtaccgcagggccaggcttgctgtagcggcctcctggctttactcg
ctggtctggactctgccgcctctgctgggctggagcagctacgggccggagggtcccggc
accacctgctcagtccagtggcaccagcgctcggccgcgtctcgctcctacgtcggctgc
ttgttcgtcttctgccttctcctgcctctgctgctcatgttgttctgctacgggaggatt
ctgctggctgtgcgggaggtcaacagggtcaaccggtcctcagctgagcggaaggagggc
cgtatccttctgatggtggtctccatggtgacaggctacttgttgtgctggatgccatac
ggcattgtggcaatgctctcctcctttggacggcccggcgtggtgccacctgccgccagt
ttagttccctccctgctggcaaagaccagcaccgtcctcaaccctgttatttatgtgctg
ctcaacaaccagttctccaggtgtttcctctacatgatcaggtgcagctcagaagccccg
cccacctcaggccacctcactccgcccagtgacacgggggtgtggcctcaccctcctgac
ctgccaacagaggagcaaaacacagcacctgccatgttcacatccagagaccagcagccc
cagaggactgacccagtgctgatggtggactttcaaacatag
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