Lates calcarifer (barramundi perch): 108893510
Help
Entry
108893510 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43 isoform X1
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108893510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108893510
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108893510
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108893510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
PA
pAdhesive_17
FANCL_C
Motif
Other DBs
NCBI-GeneID:
108893510
NCBI-ProteinID:
XP_018547116
UniProt:
A0AAJ7VCV2
LinkDB
All DBs
Position
LG20:8413091..8488660
Genome browser
AA seq
828 aa
AA seq
DB search
MTVPQRRLAGLWPWLLMAALQVVLGQPGLESERPALRAVIKVTLLKNEPTGKPITLEGVF
VGGSAGHAEGKLMQYHPLSLCNTSEDERQESDFITIVKLEHRVPRCLPLLDKARMALDKG
AQAVIFDVSDDANAAAELRETDSLPRPVVLVEAEDAEELMGLVNKNEEAKVRIEIMMEPS
KWPHYDVGILLTIVLAILTIVLIFAFRYKCKSNRTWDSVHQQTMRAISRLETKTYSSQGC
SGSQRHRGAWGSASSSNSSPVCAICLEEFQDGQHLRIISCAHEFHRDCVDPWLLQHRTCP
LCMHNIMGEDKHISRTERQPQRNRLQQSPEQSQGFLHPQPYSSPHNHPFPQHAIPFSMRP
HYPRGPSGPYPSLGNYSGSSPMDTQTVRFLTSRPLGPSCGYRLPVEGPGRPHRIGGNCRT
STHHYTPRRPCHNYRSSCPTQRSASCSRLHHATSVTPQTRGAPAHSRQDEGSCSGGSYHT
ERSGYLADGPASDSSSGPCHGSSSDSVLNCTDISLQGVYGSWSTFRSSLSSDYDPFVYYG
PGPGHGPRRNSLEASAQARPRSLDSVVNKAGCPEEQPQTVFSHIHYHRHRHHHYEEGEHS
QGPSRGSDEEQGAAAAAAAAAPASLVLDKDSPMCPPKHSPCQCPKPDPTDRPSPGQTERQ
DHDPSSPTGPPVLMSPIPLQLQPHCCHQGHGHPPAPLGRVSGCVLDGPSVRFHQSLDLQD
DRSIHIHYGQGPGFCCSPPELHPALLPVPLILDSGGMEDWPCCAGAHVVWQKRVQQARSE
PQLLGPGTSMDRPPCRFHHGPAADCNTDICLYCQTLHHNQGSEEESGV
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcccccagcggcgcctggccgggctctggccgtggctgctcatggcggccctg
caggtggtgctgggccagccgggcctggagtccgagcggccggccctccgagcggtcatc
aaggtgacactgctgaagaacgagcctacagggaagcccatcactctggaaggggtgttc
gtgggtggaagtgccggccacgcggagggaaaactaatgcagtatcaccctttgtctctg
tgcaacacaagcgaagatgaacgacaggagagcgacttcatcaccattgtcaaactggag
cacagggtaccccgctgtttgccgctgctcgataaggctcgcatggcactggataaagga
gctcaggctgttatctttgatgtcagtgatgatgccaatgctgctgctgagctgcgagaa
acagactcccttccccgcccggtcgtgctggtggaggcggaggacgctgaggagctgatg
ggcttggtcaacaagaacgaggaggccaaagttcgtattgagatcatgatggagccatca
aaatggccacattatgatgtgggtatcctgctcaccatcgtcctggcaattcttaccatc
gtcttaatctttgctttccgctacaagtgcaagtccaacagaacctgggactctgtccac
cagcagaccatgcgggccatcagtcgattggagaccaaaacctacagctctcagggctgc
tcaggctcacagcgccaccgaggggcctgggggtcagccagcagctcaaactccagccca
gtctgtgccatttgcctggaggagtttcaggacgggcagcatttgaggatcatctcctgc
gctcatgagttccatagagactgtgttgacccctggctgctgcagcatcgcacctgtccc
ctctgcatgcataacatcatgggtgaggacaagcacatttccagaacagagcggcagcct
cagaggaacagactccagcagagtccagagcaaagccagggcttcctgcaccctcagcct
tacagcagcccacacaaccaccccttccctcagcatgctattcccttctctatgaggcct
cactatcctcgtggaccctcaggaccatatccctctctgggaaactacagtggctcctct
cccatggacactcagacggtacgtttcctcaccagcaggccacttggccccagctgtgga
taccgccttccagtagagggtcctggaaggccccacaggattggagggaactgcaggacg
tccactcaccactacacccctcgtcggccgtgccacaactatcgttcatcttgtccgacc
cagcgcagtgcatcctgctcaagactgcaccacgccacctctgttacaccacagacccgt
ggagcacctgcccacagccggcaggacgagggcagttgctcaggtggcagctaccacaca
gaacgcagtggatacttggcggacgggccggcgagtgactccagctcaggtccctgccat
ggctcctccagtgattcagttcttaactgtactgacatatccctgcagggagtttatggc
agctggtccaccttccgtagctctctgagtagtgactatgatccatttgtgtattacggg
ccaggtcctgggcacggtccccggagaaacagcttggaggctagtgcccaggcccggccc
aggtctctggattctgtggtgaacaaagcaggctgccctgaagaacagccacagactgtg
ttcagccacatccactaccaccgccacagacaccaccactatgaggagggggagcacagc
cagggcccgagcagaggttcagatgaggagcagggggccgctgccgccgctgccgctgct
gcacctgcttctcttgtcctggacaaagactcacccatgtgccctcctaagcacagcccc
tgccagtgcccaaagccagaccccacagatcggcccagcccgggacagacagagcgtcag
gaccatgaccccagcagccccacgggacctcctgtcctgatgtccccaatccccttacag
ctccaacctcactgctgccaccagggacacggacaccctcccgcccctcttgggcgagtg
agtggctgtgtgcttgatggcccctctgttcgcttccaccagagcctggatctgcaggat
gaccgtagcatccacattcactacggccagggcccgggcttctgctgctctcctcctgag
ctgcaccctgctttgctccctgtgcccctcattctggactctggagggatggaggattgg
ccttgctgcgccggggcccatgtcgtgtggcaaaaacgggttcagcaggctcggtcagag
cctcagctcctggggcctgggacttctatggacaggccaccctgcaggttccaccatggg
cctgctgctgactgcaacacagacatttgtttatactgccaaacattacaccacaatcag
ggatcagaagaggagtctggtgtgtga
DBGET
integrated database retrieval system
