Lates calcarifer (barramundi perch): 108893516
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Entry
108893516 CDS
T04895
Symbol
irf1b
Name
(RefSeq) interferon regulatory factor 1b isoform X1
KO
K09444
interferon regulatory factor 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
108893516 (irf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108893516 (irf1b)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
108893516 (irf1b)
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GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
108893516
NCBI-ProteinID:
XP_018547125
UniProt:
A0A4W6E965
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Position
LG20:16774521..17097727
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AA seq
290 aa
AA seq
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MPVSRMRMRPWLERMIDSNTISGLAWVDKDKTMFSIPWKHAARHGWEMDKDACLFKQWAI
HTGKYVEGQTSDPKTWKANFRCAMNSLPDIEEVKDRSINKGHQAMRVFRMLPATPKSRDK
RSKAKEAKQRNKGPVVKMEEDTDSSDTQSTLSEEILSTQENRVDSTVHTDQQDFPLIAYS
DVPDYSSSVEIENDNFSAFCQRFEVSPDHSPEYDDIIEICQQLEKETHWLSSSLDGTGFL
SNEACTSPGSQWSDSSSADELDELPQYTTLVSDFTSHTDNLWKPFYPPML
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgtcaaggatgaggatgaggccgtggctggagaggatgatcgactctaacacc
atctctggattggcttgggtggacaaggataagaccatgttctcgattccctggaagcac
gcagctcggcacggctgggagatggacaaggacgcgtgcctgttcaagcagtgggccatc
cacacagggaaatacgtggagggccagacctctgaccccaagacatggaaagccaacttc
cgctgtgcgatgaactcactgcccgacatcgaagaggtgaaagacaggagcatcaacaag
ggccaccaagccatgcgcgtcttcaggatgctgcctgccaccccaaaatctagagataaa
cgaagcaaagcaaaggaggcaaagcaaaggaacaagggcccagtggtaaagatggaggaa
gacacagactccagtgatactcagtccacactgtcagaggagatcctgtctactcaggaa
aacagagtcgacagcacggtgcacacagatcagcaagatttccccttgattgcttattcc
gatgttcctgactattcttcgtcggtggagattgagaatgacaacttttcagccttctgc
cagagatttgaagtttcaccggatcacagccctgagtacgacgacattattgagatttgc
cagcaactggagaaagaaacacactggctgtcaagcagtttagacggcacggggttcctg
agcaatgaagcatgcaccagtccagggagccagtggagtgactcttcctcagccgacgaa
ctagatgaactgccacagtacacaactctggtctcagacttcacaagccacacagacaac
ctctggaaacccttttaccctcccatgctctga
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