Lates calcarifer (barramundi perch): 108893519
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Entry
108893519 CDS
T04895
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X2
KO
K04646
clathrin heavy chain
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04142
Lysosome
lcf04144
Endocytosis
lcf05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108893519 (cltca)
04142 Lysosome
108893519 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
108893519 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108893519 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108893519 (cltca)
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
108893519 (cltca)
Exosome [BR:
lcf04147
]
Exosomal proteins
Proteins found in most exosomes
108893519 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
108893519
NCBI-ProteinID:
XP_018547138
UniProt:
A0AAJ7VCV6
LinkDB
All DBs
Position
LG20:complement(7814822..7846924)
Genome browser
AA seq
1678 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICVREKVGEQTQVVIIDLADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRLAVRNNLAGA
EELFARKFNNLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPTQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVYL
RANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRINPEQGLQFAQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQALTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDVIKSLILVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPDLWASVL
LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYISRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
VQAADKSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFFS
KVKQLPLVKPYLRSVQNHNNKSVNEALNNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLSWFLQE
NKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLETSESLR
KEEEQATETQPIVYGTPQLMLTAGPSVPVAPQQPYGYGYQAPAGYGQPAAQPGFGYGM
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccaaaacttagggatc
aatccagccaacataggcttcagcaccctcaccatggaatcggacaagttcatctgtgtc
cgggagaaggtgggcgagcagactcaggtggtgatcattgacctggctgatcccaataca
cctatccgcaggcccatttcagctgacagcgccataatgaatccagccagcaaggtcatt
gcacttaaagctgccaaaacccttcagatcttcaacattgagatgaagagcaagatgaag
gcacacaccatgacagacgatgttaccttctggaagtggatctcccttaacacagttgca
cttgtgactgacaatgccgtctaccattggagcatggagggtgattcacagcctgtgaaa
gtctttgaccgccactccagtctggcgggctgccagatcatcaactaccgcactgacgcc
aagcagaaatggctcctgctcattggtatctcagcccagcaaaatcgggtggtaggagct
atgcagctctactctgttgatagaaaagtttctcagcccattgaaggccatgctgccagc
tttgcccagttcaagatggagggaaatgcagaggagtcgactttgttctgcttcgctgtc
aggggccaagctggaggaaagttgcacatcatcgaagtcgggactccaccaactggcaac
cagccatttccaaagaaagcagtggatgtgtttttccctccagaagcccagaatgatttc
cctgtggccatgcagataagctccaagcaagatgtggttttccttatcaccaaatatggc
tacatccacttgtatgacttggagacaggcacctgcatctacatgaaccgcatcagtgga
gagaccatctttgtcactgctccgcatgaggccacctccggcatcattggcgtcaacagg
aagggacaggtgctgtctgtgtgtgtggaagaggaaaacatcatcccatacatcaccaat
gtactgcagaatccagatctggctctccgtttagctgtccgcaacaaccttgctggcgct
gaagagctcttcgcacgcaagttcaacaacctgtttgctgctggcaactactctgaggct
gccaaggtggcagccaatgcaccaaagggtatcctacgaaccccagacaccatccgtcgc
ttccagagtgttccaactcagccaggccagacctcccccttgctgcagtactttggtatc
ctattggaccagggccagctcaacaagtttgagtctctggagctctgtaggcccgtcctc
cagcagggacgaaagcagcttctggagaagtggctgaaggaagacaagttggagtgttca
gaggaacttggtgacctggtgaaggcagtggatcccactctggctctcagtgtctacctg
agggccaatgtccccaacaaggtcattcagtgctttgcagagactggccagttccccaag
attgtcctgtacgccaagaaggtcggctacactccagactggatctttctgctgaggaat
gtgatgcgaatcaacccagaacaaggcctgcagtttgcccagatgctggtccaagatgaa
gagccactggctgacatcacacagattgtagatgtgttcatggagtacaacctgatccag
cagtgcacctcattcctcctggatgctttgaagaacaacagaccctcagaaggaccactg
cagacccgtctgctggagatgaacctcatgcatgctccacaggttgctgatgctatcctg
ggcaaccagatgttcaccaactatgatcgcgcccacatcgcccagctgtgtgagaaggct
ggactcctgcagagagcgctggagcactacaccgacctgtacgacatcaagcgtgctgtg
gtgcacacacacctgctcaacccggagtggctggtgaacttttttggctcgctgtcagtg
gaggactctctggagtgcctcagggccatgttgtcagctaacattcgccagaacctgcag
atctgtgtccaggtagcttccaagtaccacgagcagctcaccacacaggctctcactgaa
ctctttgagtccttcaagagctttgaaggtttgttctacttcctgggctctattgtgaac
ttcagtcaggaccccgaagttcacttcaaatacatccaggccgcctgcaagacgggtcag
atcaaagaggtggagaggatctgtagagagagcaactgctacgaccctgagcgcgtcaag
aacttcctcaaggaagccaaactcactgaccagctgccgctaatcatcgtctgtgaccgt
tttgattttgtccatgacctggtcctctacctgtaccgcaacaacctgcagaagtacatt
gagatctatgttcagaaggtgaatccaagccgtctgcctgttgtggttggcggtctccta
gatgtggactgctcagaggatgtcatcaagagcctgatcttggttgttaggggacagttt
tccactgatgaactggtcgctgaggtggaaaagaggaacagactgaagctgctgctgccc
tggctggagtctcgtatccatgaaggctgcgaggaacccgccacccataatgccctggcc
aagatctacatcgacagcaacaacaaccctgaacgcttcctgcgggaaaacccgtactat
gacagccgtgtggtgggaaagtactgtgagaagagagatccccaccttgcctgtgtggcc
tacgagagaggacagtgtgaccaggagctgatcaatgtctgcaatgagaactccttgttc
aagagcctgtctcgctacctggtccgtcgcaaagaccctgacttgtgggctagcgtgctg
ctggagagcaacccctacagacgaccactgattgaccaggtggtgcagacagcactgtca
gaaacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgacagcagatctg
cccaatgagctcattgagctgctggagaagattgtattggacaactctgtcttcagtgaa
cacagaaatctgcagaatctgctgatcctgacagccataaaagctgatcgtacacgtgtg
atggagtacatcagcaggctagacaactatgacgctcctgacattgctaacattgctatc
agcaatgagctctttgaggaggcctttgccatcttcaggaagtttgacgtcaacacctct
gctgtgcaggtgctgatcgagcatattggcaacctggatcgtgcctatgagtttgcagag
cgttgcaatgagccagctgtgtggagccagctggctaaggctcagctacagaagggcctg
gttaaggaggccattgactcctacatcaaagctgatgacccctctgcgtacatggaggtg
gtacaggctgctgataagagtggtaactgggaggatttggtcaaattccttcagatggct
cgtaagaaggcccgtgagtcctacgtagaaacagagctcatctttgccttggccaaaacc
aatcgcctggcagaactggaagagttcattaatggacctaacaatgctcacatccagcag
gttggcgatcgctgttatgatgagaaaatgtatgaggccgctaagctgctgtacaacaac
gtctccaactttggccgtctggcttcaactctggtgcaccttggggagtaccaggctgct
gtggacggtgcccgtaaggccaacagcacccgcacctggaaagaggtgtgcttcgcctgc
gtggatggaaaggagttcagactggcccagatgtgtggtctccacattgtggtgcacgct
gatgagctggaagagctgatcaactactaccaggaccgcggttactttgaggagctgatc
accatgctggaggctgctctgggcctggagcgcgctcacatggggatgttcaccgagctg
gccatcctttactccaagttcaagccccagaagatgagagagcatctggaactcttctgg
tccagagttaacatcccaaaggtcctgagagcagcagagcaggctcacctgtgggcagag
cttgtcttcttgtatgacaagtacgaggagtatgacaacgccatcatcaccatgatgaac
cacccaacagacgcctggaaagagggacagtttaaagacatcatcaccaaggtggccaat
gtggagctctactacaaagccatccagttctatctggagtttaagcccttgttactgaat
gatttgctcatagtgctttcccccagactggaccactcccgtgctgtcaacttcttcagc
aaggtgaaacagctgcccctggtcaaaccctacctgcggtcagtacagaaccacaacaac
aaatcagtcaatgaagcacttaacaacctcttcatcacagaggaggactatcaggcactg
aggacctcaatagatgcctacgacaacttcgacaacatctcactggcccagcgcttggag
aagcatgagctgattgagttcaggagaatcgctgcctacctcttcaagggcaacaaccgc
tggaaacagagtgtggaactctgcaagaaggataagctctataaggatgccatgcagtat
gcatctgagtctaaggacacagagctggcagaggagctgctgtcctggttcctacaggag
aacaagaaggagtgtttcgccgcctgcctgttcacctgctatgacctgctgcggcctgac
gtggtgctggagaccgcctggaggcacaacatcatggacttttctatgccatacttcatt
caggtcatgagggagtacctcagcaaggtagataaactagaaacctcagagtccctaagg
aaagaggaggagcaggcaacagagacacaacctattgtctatggcacaccccagctgatg
ctgacagcgggccccagcgtacctgtggccccacagcaaccttatggctacggctaccag
gcacctgcaggatatggtcagccagcagctcagccaggctttggctacggcatgtaa
DBGET
integrated database retrieval system
