Lates calcarifer (barramundi perch): 108893526
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Entry
108893526 CDS
T04895
Name
(RefSeq) beta-1,4-galactosyltransferase 4
KO
K07969
beta-1,4-galactosyltransferase 4 [EC:
2.4.1.90
2.4.1.275
2.4.1.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00533
Glycosaminoglycan biosynthesis - keratan sulfate
lcf00601
Glycosphingolipid biosynthesis - lacto and neolacto series
lcf01100
Metabolic pathways
Module
lcf_M00071
Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00533 Glycosaminoglycan biosynthesis - keratan sulfate
108893526
00601 Glycosphingolipid biosynthesis - lacto and neolacto series
108893526
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108893526
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.90 N-acetyllactosamine synthase
108893526
2.4.1.275 neolactotriaosylceramide beta-1,4-galactosyltransferase
108893526
Glycosyltransferases [BR:
lcf01003
]
Glycan extension
Type 2 chain/Poly-N-acetyllactosamine
108893526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_7N
Glyco_transf_7C
Motif
Other DBs
NCBI-GeneID:
108893526
NCBI-ProteinID:
XP_018547150
UniProt:
A0A4W6CSN2
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All DBs
Position
LG20:13449141..13456165
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AA seq
348 aa
AA seq
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MGLCSPVCKILRRGKYFVLLFLSLSLLAWIATFSGETVKSAQVSPSTTQTLVKGDSLRDK
LTSWTTAPDRLNTPPAKGECPEKSPLLQGAVKLSFESSLKLKDVQSDNKGVTEGEYEPPD
CRARQSVAILIPHRSRERHLLYLLHHLHPFLQRQQLHYAIYVIQQAGDATFNRAKLLNIG
YLEALKDYSWECFIFHDVDLVPENDHNSYVCDKQPKHLVVGRNATGYKLRYKGYFGGVTA
MSKEQFLQVNGFSNIYWGWGGEDDDLRIRVELQKMKIVRPPADVARYTMVFHKRDSGNEI
NKDRMRLLGRTSQVWRKDGLNSCSYKTLSVERLPLYVNITVDIGKPQS
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgggcctctgttcgcctgtgtgcaagattttgcgcagggggaaatattttgtactgctc
ttcctctcactctcgctgctggcatggatcgcaactttttcaggcgaaacagtgaaatcc
gcccaggtttcccccagtacaacacaaactcttgtgaaaggagacagtctaagggataaa
ctcacctcttggacaacagcacctgatcgcttaaatactccaccagcaaaaggcgagtgc
cctgagaagtcaccattactacagggagctgtgaagctgtccttcgagtcctctctgaaa
ctgaaggatgtgcagagtgacaacaaaggagtgactgagggcgagtatgagcccccagac
tgtagagcgaggcagagtgtggcaatcctcatccctcatcgcagccgagagagacacctc
ctctacctcctgcaccacctgcacccctttctgcagaggcagcagctacattacgccatt
tatgtcatccagcaggctggtgatgcaacctttaaccgtgccaagttactgaatattgga
tatttggaggcactgaaggactacagttgggagtgcttcatctttcatgatgttgatcta
gttcctgagaatgatcacaattcatatgtctgtgacaagcagcccaaacacttggtagtt
ggccggaatgccacaggatacaagctgcgttacaaaggatactttggaggagtcacggca
atgagcaaagagcagtttcttcaagtgaacggattctcaaacatttactggggttggggg
ggagaggacgatgaccttcgcatcagggttgagctgcagaaaatgaagattgtgcggcca
cctgctgatgtagctcgctataccatggtattccacaaacgggacagtggcaatgaaata
aataaggataggatgaggttattgggacgaacatcacaggtatggagaaaggatggactc
aacagctgttcatataagacattgtcagtggagaggctgcctctttatgtgaacattact
gtggacattggtaagccacagagttga
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