Lates calcarifer (barramundi perch): 108893543
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Entry
108893543 CDS
T04895
Name
(RefSeq) nuclear factor related to kappa-B-binding protein isoform X1
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108893543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108893543
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
108893543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
Motif
Other DBs
NCBI-GeneID:
108893543
NCBI-ProteinID:
XP_018547174
UniProt:
A0AAJ7Q5I1
LinkDB
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Position
LG20:13757559..13766206
Genome browser
AA seq
1277 aa
AA seq
DB search
MDALTHMLTDPLDPKEENDGQITEECMLGNCRVNLPEDLLEDPEIFFSVMSESTWSEVLT
DSQRQHLRQFLPQFPDNNVAEQDSTIGDLFNNRNFNFGNPLHLAQKLFRDGYFNPEVVKY
RQLCAKSQRKRQLYSLQQYYHRLLKQILVSRKELLDFAVHNGLDFPPKRKLPTKSHAEMR
EPRVRRRLSRILKEVKTECGDSNASSDDDDLSLWTPAPQSPSSPTPTVSLRVLPSLSTQD
MKTTEKIELGEQDLKTMLQNHREKRKRQPDHPDLMTSDIHLGDILSRANIGRKGTMSLFD
LSLPKKKMRDERRKKKMRTIKVESEDPFEALAPADTPSAPPANIINSLPDTPSTPLPNIK
EEIVEECQSSPVTVEEIAVSFFSLLENILRAEPLASTSMLEEKVQMWQSSPASSLNTWFS
SASCWSDLVLQALQFLAGETKDGMMALPSGFSPFVEFSDESQQWRWIGPTQDTEKDLSAL
CQLWLDSKDLVVKTENEDMLEMTSPTPRVSSTDYVVRPSTGDERQVFQVQEQQRYNQPHK
AFTFRMHGFESVVGPVKGVFDKEMSLNKAREHTLLRSDRPPYVTILSLVRDAAARLPNGE
GTRAEICELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRHR
SQEEFERIHQAQAAAAKARKALQQKPKPASKPKSGSKDGGSKTPGCLEAGQDICSNPMSP
TPTTPTPNMPGTPKSPLPCTATTPTKTGVPDTIKTSPGVLLVSPPSLPQLGTILPTSQAA
PPASQTVTSQHAARIVSHLAAGSLPQVRVVSAQAGLGSSAGSQQATLVHQTPHQIRMPVS
VAAKGISQAVVSVPLRSQSASSPVQVPTTLSVSAVTVAKPQTGSPGSPANNPASPAVLQG
VTSPNIKQVSITGQLGMKTPGGAGIPITATNLRIQGKDVLRLPPSSITTDAKGQTVLRIT
PDMMATLAKSPVATVKLTPDFLGTAASGSKSISATLHVTPPHPSPSSASSATSCTGEAQT
TKAGPVASTLLKAAGDTAIRLMPTLAVTADQKSRTFSTVTTPDKSGATIRIMPGLGVIPQ
KQGQTITMTTTTGSKPLTASTCANVVTMAASVVAGAKGITVAPGASGSPLTLGTATATVR
QVPATVVTTQTGKLPARITVPLSVLNQPLKSKSVVTTPIVKGSLNANISSLGRNIILTTM
PAGTKLIAGNKPVSFVTAQQFQQLQQQGQATQVRIQTVPAQLQPHMAAGSPKSVSTVVVT
TAPSPKCAPDPPPAPQQ
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggatgccctcacacatatgctcacagatcctcttgatccaaaagaagaaaacgatgga
caaatcacagaggaatgcatgctggggaactgcagagtgaaccttccggaggacctgctt
gaggacccggaaatcttcttctctgtgatgagcgaaagcacctggagtgaagtactgaca
gattcccagaggcagcaccttcgtcagtttttgccacagtttcctgacaataacgttgcg
gagcaggacagcaccatcggcgacctgttcaacaacagaaattttaactttggaaatccc
cttcaccttgcacaaaaattattcagagatggctacttcaatcctgaagtggtcaagtac
agacaattgtgtgccaagtcccagagaaagcggcagctgtactcccttcagcagtattac
cacaggctgttgaagcaaatcctcgtctccagaaaggagctgctagattttgcagttcat
aatggtctggactttccaccgaagagaaagttaccaactaagtctcatgctgaaatgcgg
gagccaagggttaggagaagactgagccgtatattaaaggaggtcaaaactgagtgtgga
gacagcaatgcttcatctgatgatgacgacttatccttatggaccccagcaccacagtca
ccctcctctccgacgcccactgtctcgctcagagttttgcccagcctctccacccaagac
atgaagactactgaaaaaatagaactaggtgagcaggacttgaaaaccatgctgcaaaat
catcgggagaaaaggaagcgacagccagaccatccagacttgatgacatctgatatccac
ctcggagacatactctcaagagcaaacattggtcggaaggggactatgtcgctctttgat
ttgtctctgcctaaaaagaagatgagagatgagagaaggaagaagaaaatgaggacaatt
aaggtggagtctgaggatccctttgaagctcttgcacctgcagacactccatcagctccg
ccagcgaacatcatcaactccctgccggacacaccgtctactccgctgcccaacatcaag
gaagaaattgtggaggagtgtcagagcagcccggtcacagttgaggaaatagctgtcagt
ttctttagcttgttggagaacatcttaagagcagaaccacttgccagtacttcaatgttg
gaggagaaagttcagatgtggcagtcctctccagccagttccctcaacacgtggttttca
tctgcctcctgttggtctgacctggtccttcaagccctccagtttcttgcaggagagact
aaagatggcatgatggcgctccccagtggcttttctccgtttgtggaattttcagatgaa
tctcagcagtggaggtggatcggtcccactcaggacacagagaaggatctcagtgcactc
tgtcagctgtggctggactccaaagatttagttgtcaagacagagaacgaagacatgtta
gagatgacttctcccacaccaagagtcagctcgactgattatgtggtgcggcccagcact
ggagatgaaagacaagtgtttcaagtccaggagcagcagcgatacaaccagccacataaa
gccttcaccttcaggatgcacggcttcgaatctgtggtggggcccgtcaaaggagtgttt
gataaggagatgtctctcaacaaagccagggagcacacgctgctccgctcagaccgacca
ccttacgtcaccattctctctctggtacgggatgcagcagccaggttacccaatggagaa
ggaacaagggcagagatctgtgaactgttgaaagactcacagtttctcgctccagatgtc
actagtgctcaggtgaacacagttgtcagtggagctctggatagacttcattatgagaaa
gatccctgtgtgaagtatgacattggccgcaagctgtggatttacctgcaccgccatcgc
agccaagaggagtttgagaggatccaccaggctcaagctgctgccgcgaaagcaaggaag
gccctacagcagaaacctaaaccggcatctaagcctaagtctggaagtaaagacggaggc
agtaagactcctggatgtctggaggcaggacaggatatttgctccaaccccatgtcgccg
acccctacaacacccaccccaaacatgcctggaacccctaagtcacctttaccctgcaca
gccaccacgccgacaaaaactggagtcccggatacaatcaaaaccagcccaggtgttctt
cttgtgtcccctccctcattgccccagctgggaaccatcttacccaccagtcaggctgct
ccaccagcttcacagacggtcacgtcccaacacgcggctcgaatagtgagccacctggcg
gcgggctccctcccccaggtgcgggtagtttctgcccaggctggtctgggctcctcagca
ggaagtcagcaggccacactggtgcatcagacccctcaccagatcaggatgcctgtgtcc
gtggcagccaagggcatttcacaggcagtggtttctgtgcctctgaggagtcagtctgcc
agtagtccagtccaggtgccaaccaccctgtctgtgtctgctgtaactgtggccaaacct
cagactgggtcgcctggtagtccggccaacaaccctgcttctcctgctgtgctgcaagga
gttaccagcccgaacatcaaacaggtgtccatcacaggacagctgggaatgaagactcca
ggaggagcaggaattccaataacagccacaaacctgcgcattcagggtaaagacgtccta
cgccttcctccctcctccatcaccacagacgctaaaggccagaccgtgctgcggataacc
ccagacatgatggcaactcttgccaaatccccagtcgcaactgtcaaactcacccccgac
tttctgggcactgccgcctcaggcagcaagagcatatcagccactctccatgtgacacca
ccccacccgtcaccttcctccgcctccagtgctacatcctgtacgggggaagcacagacc
actaaagcgggccccgttgcctccaccttgttgaaggctgcaggagacacagccatacgt
ctgatgcccacactggctgtcacggccgaccaaaaatctaggaccttctccacggttacc
acccccgacaagagtggcgccaccatccggataatgccaggccttggtgttattccgcag
aaacagggtcagaccatcacgatgacaaccaccactggcagtaaaccgctcacagcgtct
acatgtgctaatgtagtgaccatggctgccagtgttgtggctggtgctaaggggatcacg
gtggctcctggggcatcgggctcacctctgacactaggaacagctacagccactgtgcgg
caggtccctgctacagtggttactacacagacagggaagttacctgcacggatcactgtg
cccctctctgtcctcaaccagccactgaagagcaagagtgtagtgaccacaccgattgtg
aaaggaagtctcaatgcaaatatcagcagcctgggcaggaatatcatcctgaccactatg
cctgctggcacgaagctgattgcagggaacaaaccagtcagctttgtcacagcgcagcaa
ttccagcagcttcagcagcaaggacaggccacgcaggttcgcatccagacagttccggcg
cagctgcagccgcacatggcagcaggctctccaaaatcagtttccactgttgtagtcaca
acagcaccttcacccaaatgtgcacccgatcccccacctgcacctcaacagtga
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