Lates calcarifer (barramundi perch): 108893689
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Entry
108893689 CDS
T04895
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03440
Homologous recombination
lcf03450
Non-homologous end-joining
lcf04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108893689
03450 Non-homologous end-joining
108893689
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
108893689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcf03032
]
108893689
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108893689
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
108893689
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
108893689
BRCA1-C complex
108893689
NHEJ (non-homologous end-joining)
MRX complex
108893689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
ABC_tran
zf-met
AAA_29
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
108893689
NCBI-ProteinID:
XP_018547458
UniProt:
A0A4W6EYQ6
LinkDB
All DBs
Position
LG20:complement(18880845..18904809)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVNGDKLSVQRSMSCTQKAKTYSFKSLEQVITR
IKDGEKVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRLTQNQTVKECQLELRYLKQNKEKAQELRETVATKEAQLMSSKDS
VQQIESQIEPLENRLMDIDTKLGKVMKLDNDIKALESRKKQMEEDNRELEETMEQVFQGS
DDELQETYQNHQRRVKEKERRLTDCQRELERAGRECQRLNRVKADLLVEQGRLQLEADRH
TQNIKNRDTQVRSLSSYLEMEGYDRPPFTTLQLESFHCHVTQRQEQEKQTASQILADLQE
KEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNVRAELQRLEGSSTRLQELDNE
LAKAERELQSAVQSSNVEELKAEVVELQREKAELDRVQRQLDQEMETLNTHTTTRTQMEM
LKKDKTEKEDQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYAKSKEINSTRDRLAKHNKD
LASSEQNKSHIAAELRKKEQQLTSDEEKFFKVCGSQDLEQDLNKLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDEMVSLRPVRQSIVQFQEKELPDLRNRLQTVNREIERLKRDVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLKEVERKIAQQAAKLQGVDLTRTVQQVSQEKQETQHMLD
TTSSKMELKRKLIQDQQDQIQMLKSAVNETRAEKLQLSSDMQKQQQLEEQCVEFTTEIQA
LTRDIREAKEQLSPLSAALEKLQQEKQELVERKRQKQEEGQEKINAIKERVKVITTLERD
ITKYVDEGKDEYREQKESELQETNTQLHEAEKQKEKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKDIVAKREALMKDMGNMQVMQLRQERRDAERKLEDLKKNRSIALGRQKG
FEEAIMDYRKQLREDQYDKADERYKNKMIIMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSYAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatccttggtgtgaggagctttgggattgaggataaa
gacaaacaagtcatctcgttcttcactcctctgactgtgctggttggacccaatggagca
gggaaaacgactattatcgagtgccttaagtatgcaacatcaggagaacttccccctgga
tctaaaggaggtgcctttgtacatgatccaaaggatgcccatgagacggatgtgcgagca
cagattcgcctcttattcacagatgttaacggagacaaattgagcgtccaacgctccatg
tcatgcactcagaaggcaaagacctactccttcaaaagcttagagcaggtcatcaccaga
ataaaagacggtgagaaagtgagtttgtcgtctaagtgtggtgagctggaccgggagatg
atttcagccttgggtgtatcaaagcctgtgctcaatcacgtcatcttctgtcaccaagaa
gagtctaactggccactgagtgaaggcaaagcactcaaagacaagtttgactcaatcttt
gctgcaacaaagtatatcaaagctctggagacgatgcgtcagctgcgtctcacacagaac
cagacagtcaaagaatgtcagttagagctgcgctacctgaagcagaacaaggagaaagcc
caggagcttagagagactgtggctaccaaggaggctcagctgatgtcctctaaagacagc
gtccagcagatagagagccagattgaaccacttgagaatcgacttatggatattgacaca
aaacttgggaaagtgatgaagctggacaatgacatcaaggctttagagagcaggaagaag
caaatggaggaagacaacagggagctggaggaaacaatggaacaggtgtttcaaggttca
gacgacgagctgcaggagacttatcagaaccaccagaggagggtgaaagagaaggagcgg
aggctgacagactgccagagggagctggagagagctggccgggaatgtcagagactgaac
agagtcaaggccgatctcctggtagagcaaggtcgtcttcagctagaggccgaccgccac
acccaaaacatcaagaaccgagacactcaggttcgctctttgtcatcctatcttgaaatg
gagggttatgacagaccacccttcaccactcttcagcttgagagttttcactgtcatgtc
actcagagacaggagcaggaaaaacagacagccagtcagattttggcggacttgcaggaa
aaagagcagcagaagcagcagtctattgatgaaatgagggataagaagactggcctggag
agaactgtggagctgaagagagacctccagggaaagaagcagcaagagctgaggaacgtc
agagcagagctgcagaggctggagggttcgtctactcgactacaagaactggacaatgaa
ttggctaaagcagagcgtgagctgcagagcgcagtgcagagctccaacgtggaggagctg
aaagccgaggttgtggagctccagagagagaaggccgaactcgaccgtgtgcagagacag
ctcgaccaagagatggagacgctcaacacacacaccaccacacgcacacaaatggaaatg
ctgaaaaaagacaagacagagaaggaggaccaggtacgtaagatcaagtctcgacacagt
gaggatctggtgtcattactgggccactttcccaacaagagagagctggaagactggatc
tatgccaagtctaaggaaatcaacagtaccagggacagacttgccaaacacaataaagac
ctggcatcaagtgagcagaataaaagtcacattgctgctgagctgcgtaagaaggagcag
caattaaccagtgatgaagagaaattcttcaaagtgtgtggcagtcaggatctggagcag
gacctgaacaaactgcaggaagatctggagaagatatccaaacagagagccatgctagct
ggagccacagcagtatacacccagttcatcagccaactgacagaggagagagagccctgc
tgccccgtgtgtcagcgcacgttcccttcagagtctgatctgcaggaggttatcagcgac
atgcagtccaaactgcgcctggtgccagacaagctgaaaaacacagaacaggacctgaag
agaaaggagaggaagagagatgagatggtgtctctcagacccgtcaggcagtccattgta
cagtttcaggaaaaggagttgcctgacctaagaaaccgtctgcagactgtgaatagagaa
atcgagaggctgaaaagagatgtggaggagcaggagactctgcttggtaccctaatgtca
gaggaggaaacagccaaggcctgcctgcaggacatatctctcatggacagatacctgatg
gaccttaaagaggtggagaggaaaatagctcaacaggcagccaaactccagggagtagac
ctgaccagaactgtccagcaagtcagtcaggagaaacaagaaactcaacatatgctagac
accacctccagcaagatggagctgaagcgtaagctgatccaggaccagcaggatcagatt
cagatgctgaaaagtgctgtgaatgagacgagagcagagaagctccagctgagcagtgat
atgcagaaacagcagcagctggaggagcagtgtgtcgagttcaccactgagatacaggcc
ttaaccagggacataagggaagcaaaggagcagctgtctcctttgtctgctgctctggag
aagctgcagcaggagaagcaggagctggttgaacgcaagaggcagaagcaggaagaaggg
caggagaagattaatgccattaaagagcgagtgaaggtgatcaccaccttggaaagagac
atcaccaaatatgttgatgagggcaaagatgaatacagagagcaaaaagagtctgagctt
caagaaaccaacactcagctgcatgaggctgagaaacaaaaagagaagatcaacaaggag
atgggaaacatccgtcaagacatagacactcaaaaggtccaggagcgctggttgcaagac
aacctgaccttgaggaagcgtgtggaggagttgaaggacattgtggccaaacgcgaggcc
cttatgaaagacatgggcaacatgcaagttatgcagctgcgccaagaacgacgtgacgca
gagcgcaagttggaagacttgaagaagaaccgcagtatcgcacttggtcgccagaaaggc
tttgaggaggcgataatggattacagaaaacagctgcgagaggatcagtatgacaaagct
gatgagcgctacaaaaacaagatgatcataatgaggaccacagagctggtcattaaagac
ctggatctctattacaaggcccttgatcaaacaatcatgaaattccacagtatgaaaatg
gatgagatcaacaagatcatccgagacctgtggcgcagcacctacaggggtcaagacatt
gaatatgtggagatcaggtctgatgtggatgagaactcatatgctggagtgaagcggagg
gtttacaactacagagtggttatggtgaaaggagacacagctttggatatgagaggccgc
tgcagtgctggacagaaggtgttggcctccctgatcatccgactagctctggcagagacc
ttctgtctgaactgtgggatcctggccctggacgagcccaccaccaacctggaccgggag
aacattgagtcactggcacacgccctcgtagaaatcattaagagtcgctctcgccaacgg
aacttccagctgctgatcatcacccacgacgaggactttgtggagctcctggggcggtcc
agctacattgaacacttctaccgcatccgtaagaaccaggaccagaactctgaaatcaca
aagtgcagcatcacctccctctcatcttatctccactga
DBGET
integrated database retrieval system
