Lates calcarifer (barramundi perch): 108893700
Help
Entry
108893700 CDS
T04895
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108893700
03036 Chromosome and associated proteins [BR:
lcf03036
]
108893700
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108893700
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108893700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
S1_RRP5
HHH_3
HHH_9
Tex_YqgF
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
108893700
NCBI-ProteinID:
XP_018547476
UniProt:
A0A4W6FNP9
LinkDB
All DBs
Position
LG20:complement(21164956..21180363)
Genome browser
AA seq
1753 aa
AA seq
DB search
MSDFIESEAEESEEEFEEKDLKPKKTQRFMEVDDEEEEEENTEDQDEQGNLRGLIDDGDE
EGEEEEEEAERSRSGADSDSEEEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKY
DRVKTLDDDEEDDDEKDLIADEIFHGDGEGELEEGEAVDEPLQQADDDEEGEDEESDIDD
FIVDDDGQPITKKRGKKFSGYTDAALQEAQEIFGGDFDFADFDADAYDQGEEEEEDQDEE
GWDRPKKQTKRRQGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPVKPAED
DELEEEAEWIFRHGFSTLTISMQESTDYLDRGTTTNFSRKGPSTIAKIKEALNFMRNQQF
EVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLTRLFQKMQSYQFEQISAD
PDKPLADGIRPLDTADMERLKDVQTLEELGDVYNHFLLYYGRDIPKMQNAAKANKKRLKK
IKEVSEDGEEEELEVEEEEEQKGPDLKLASRRDMYSICQSVGLDGLAKKFGLTPEQFGEN
LRDSYQRHETEQFPAEPVELAKDYVCSQFTTPEAVLEGTRYMVAMQIAREPLVRHVLRQT
FQERAKINIKPTKKGKKEIDEAHFAYSFKYLKNKPVKELNGDQFLKMCLAEDEGLLTIDI
CIDLIGVKGYAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERALNQFLYPQMAKEL
KSKLIAEAKESIVRSCCRRLYNWLKVAPYRPDQQVEEDDDLMDENQGKGIRVLGVAYAPS
RDTPVFCALINGEGEVVDFLRLPYFMKRRNAFREDEREKKANDIENLKKFLSSKKPHVVA
VAGENRDAQMIMEDIKRTISELEQESSLPAVGVELIDNELATLYMNSKKSETDFRDYPPL
LRQAVSIARKIQDPLVEYAQVCSTDEDILCLKLHPLQEHVVKEDLLSALYCEFINRVNEV
GVDVNRAIAHPHTQSLVQYVCGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFI
NCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGAL
EEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPYRVPNTEEV
FNLLTKETPETFYIGKLITSIVTGIAHRRPQGESYDQAIRNDATGLWQCPFCQQDNFPEL
SEVWNHFDSGSCPGQAIGVRSRLDNGVQGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMK
IDIEKFSVDLTCRTSDLMDKANEWKLPKDSYYDFDTESEDQKQEEELKKKQQRTPYIKRV
IAHPNFHNISFNQAEKMMETLDQGDLIIRPSSKGENHLTVTWKVADGIYQHVDVREEGKE
NAFSLGHTLWINNEEFEDLDEITARYIQPMASFARDLLGHKYFQECNGGNKEKMEELLVR
TKREKPTFIPYFISACKDLPGKFILGYQPRGKPRIEYVTITPDGFRYRSQIFPTVNGLFR
WFKDHYQEPVPGITPTNSSRTRTPASLNATPANINIADLTRAVNALPRNMTSQMFSAIAA
VTGQGQNPNTTPAQWGSSQYGYGGSTGGGGGSSSAYHVFATPQQPMATPMMTPSYSYTTP
SQQALGTPQYPGSTPQSSHSHAHAHPHVSHHGHHGHHSSHHGHSSGTPSSSTSSRGRTPQ
QQQQQQQPPKPSGSSASAVDWGKMAEQWLKEKEAEGRKKAQRMTPRPSPSPMIESTPMSI
AGDATPLLDEMDR
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacttcattgagagcgaggccgaggagtcagaggaggagtttgaggagaaagac
ctaaagcctaagaagacccagaggtttatggaggtggatgatgaagaggaagaagaggag
aacacagaggaccaggacgagcaagggaatttacgtggactcattgatgatggagatgag
gagggggaggaggaggaggaagaagctgaaagaagtaggagtggagcggacagtgactca
gaggaagaagtgaggcatcgacgcaaaaagcgcaattatgacgactacctggatgatgat
gatcttgaccttattgaggaaaacttgggtgttaaagtgaaaaggaggaagaagaaatac
gatcgtgtaaaaacactggatgatgatgaagaagatgatgatgagaaagacttgattgca
gatgagatctttcatggggatggagagggtgagctggaagaaggggaggctgtggatgag
cctcttcaacaagcagatgacgacgaagaaggggaggacgaggagtcagatatagatgat
tttattgtggatgatgatggccagcccatcactaaaaagaggggcaagaagttctcagga
tacacagatgcagctctccaggaggcccaggagatttttggtggcgactttgacttcgct
gactttgacgcagacgcctacgaccagggtgaggaggaggaggaggaccaggatgaggag
ggctgggaccgacccaagaaacagaccaagaggaggcaggggaggaagagcatctttgag
atttacgagcccagtgagctggagagtagtcacatgaccgaccaggacaatgagatccgc
tcaacagacatgcctgagaggttccagttacgatccatcccagtcaaacctgctgaggat
gatgaactggaggaggaagctgagtggatcttcagacatggcttctccactcttaccata
tccatgcaggagagcacagattatctagacagggggacaaccacaaacttcagcaggaaa
ggccccagcacaattgccaagatcaaagaggccctcaacttcatgaggaatcaacagttt
gaggttccattcatagctttttacaggaaagagtatgtggaaccagagttaaacatcaat
gacctttggaaggtgtggcagtgggatgaaaagtggactcagctgaagaccaggaagcag
aacctgacccgcctatttcagaaaatgcagtcctatcagttcgagcagatctctgctgac
cctgacaaacctttggctgatggcatccgtcccctggacactgctgatatggagaggctg
aaagatgtgcagactcttgaagagctgggtgatgtgtacaaccactttctgctctactat
ggccgagatatcccaaagatgcaaaatgctgccaaggccaacaagaagaggctcaagaag
atcaaagaagtgtctgaggatggtgaggaagaggaactggaggtcgaagaagaagaagaa
caaaaaggacctgatctcaagctggcatctcgcagggatatgtacagcatctgtcagagc
gtgggacttgatggcttggctaaaaagtttgggttaactccggagcagtttggagaaaat
ctgagagacagttaccagcgtcacgagacagagcagttccctgctgagcctgtagagctg
gccaaagattatgtttgcagtcagttcaccactcccgaggcagtgctggagggaaccagg
tacatggtggccatgcagattgctagggaacctctggtcagacatgttctccgacagacc
tttcaggagagggccaagatcaacatcaaacctacaaagaagggcaaaaaggagatagac
gaggctcattttgcctactccttcaagtatcttaagaacaagcctgtaaaagagctgaat
ggggatcagttcttaaagatgtgcctggcagaggacgaggggctgcttaccattgacatc
tgtatagacctcataggcgtcaaaggatatgccggggaccagacgtactttgatgagatc
aaacagttctactacagggatgagttcagtcaccaggtgcaggagtggaacaggcagcga
actttagccatagagcgagctctcaatcagttcctctaccctcagatggccaaggagctc
aagagcaaactgatcgctgaggccaaagagagtattgtcaggtcctgctgtcgccggttg
tataactggctcaaggtggctccttacaggccagatcagcaggttgaggaagatgacgat
ctgatggatgagaatcagggcaaaggcattcgtgtattgggtgtagcctatgcacccagc
agagatacaccagttttctgtgctctgatcaacggggaaggagaggtggtggacttcctg
cgtctgccctatttcatgaagaggaggaatgcctttagggaggatgagagagagaagaag
gccaacgacattgaaaatctcaagaagtttctgtccagcaagaaacctcacgtggttgct
gttgctggagaaaaccgagatgcccaaatgatcatggaggacatcaagaggactatcagc
gagcttgaacaagagtcctctctgcccgctgtgggagtggaacttattgacaatgaattg
gctacattgtatatgaacagcaagaaatctgagactgattttagggattaccctcccttg
ctgcgacaggctgtgtcgatagcaaggaagatccaggatcccctggtggagtatgctcag
gtctgcagcactgacgaagatattctctgcctcaaactacacccgctacaggaacatgtg
gtgaaggaagatttgctctctgctctctactgtgaattcatcaaccgtgtgaatgaggtt
ggagtggatgtgaacagggccatcgctcatcctcacactcagagcctggtccagtatgtc
tgtggtctgggaccaagaaagggctcccacctgctcaagattctgaagcagaacaacact
cgtctggagaacaggacccagctggtcacaatgtgtcacatgggacctaaggtttttatc
aactgtgctggtttcatcaagatcgacactgcatcacttggagacagtacggactcctac
atcgaggttctggatgggtctcgtgtccaccctgagacatatgagtgggctcgtaagatg
gctgtggatgccctcgagtatgacgagtcagcagaagatgccaacccagccggagctctg
gaggaaatcttggaaaatccagaacgtctcaaagatctggatctggatgcctttgctgaa
gagcttgagagacagggttacggcaacaagggaattactctgtatgatatccgtgcagag
cttagttgcagatacaaagacctgagagttccctacagagtccccaacactgaggaggtc
ttcaatctgctcaccaaggagactccagagaccttttatattggtaagctgatcaccagt
atagtaactggtatcgctcaccggcgacctcagggagagagctatgatcaggccatacgt
aacgatgctacagggctgtggcagtgtcccttctgccagcaggacaacttccctgaactc
agcgaggtgtggaatcactttgacagtggttcatgtccaggtcaggccattggggtgcgg
tccagattggataacggcgtccagggattcattcccaccaagtttctaagcgacaaagtg
gtcaaacaccctgaggagagggtgaaggtgggcatgacagttcactgccgcatcatgaaa
atcgacattgagaaattcagcgtcgacctcacatgccgcacctcagatttgatggacaag
gccaatgagtggaagcttcccaaggacagctactatgactttgacacagagtctgaagac
caaaaacaggaggaggagctcaaaaagaaacaacagcgaacaccatatataaagcgtgtg
atcgcccaccccaacttccacaatatcagcttcaaccaggcagagaagatgatggaaaca
ctggaccagggagacttgatcatcagacccagcagcaagggagagaaccacctcaccgtc
acctggaaagtggctgacggtatctaccagcatgtggacgtgagagaggaaggcaaagag
aatgcattcagcttagggcacactctttggatcaacaatgaagaatttgaagatctggat
gaaatcactgctcggtacattcagccaatggcatcgtttgcccgggatctcttggggcat
aagtacttccaggagtgcaacgggggaaacaaggagaaaatggaggagttattggtcagg
acaaagagggaaaagccaacttttattccttactttatttcggcttgtaaagatttgcca
ggaaagttcatactgggctaccagcctcgcggaaaaccacggattgagtatgtgaccatc
accccagatggcttccgctaccgttcacagatatttcccacagtaaacggactattccgt
tggtttaaggaccattaccaagagcctgtaccaggcatcactcccaccaacagcagcagg
acaaggacacctgcgtccctgaacgccaccccagccaatatcaacattgcagacttgaca
cgagctgtcaatgccctcccacgcaacatgacctctcagatgttcagtgccatcgccgca
gtcacaggccagggccagaaccccaacaccacccccgcacagtggggctccagccaatac
ggctacggtggaagcacaggaggaggaggagggagctcctctgcttatcacgtatttgct
acacctcagcagcccatggcgacgcccatgatgacacccagctactcctacaccacacca
agccagcaggccctgggcaccccacagtaccccggctccaccccgcagtcttcacactct
cacgcacacgcccacccacacgtgtcgcaccatggccatcacggccatcacagcagccac
cacggccactcgtccggcacgccgtcgtcctccacctcatccagaggacggacaccgcag
cagcagcagcagcagcagcagccgccaaagccaagcggcagcagcgcctctgcagtggac
tggggcaagatggcggagcagtggctgaaggagaaagaagcagaggggcggaagaaagcc
cagaggatgacgccccgaccgtcacccagccccatgatcgagagcacacccatgtccatc
gctggagacgccacacctctgcttgacgaaatggaccgatag
DBGET
integrated database retrieval system
