Lates calcarifer (barramundi perch): 108893726
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Entry
108893726 CDS
T04895
Name
(RefSeq) roundabout homolog 1 isoform X1
KO
K06784
roundabout, axon guidance receptor 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108893726
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
ROBO family
108893726
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
V-set
C2-set_2
Ig_DSCAM-DSCAML_C
Ig_6
BiPBP_C
DUF7359
Anillin_N
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
108893726
NCBI-ProteinID:
XP_018547513
UniProt:
A0AAJ7VD41
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All DBs
Position
LG20:5324794..5344986
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AA seq
1159 aa
AA seq
DB search
MVQWSCGRFWSCIRVVLTCGLKMRVSAWLLCVSSLYTWAEFSQSCTCQDICATEPGLDKR
SKTRVKEHVRHSVGHQRAFHRSRPHRRKGSRVHAEETPPRVVHHPSDVVVKVGDPATLSC
RVDGNPKPTIEWLRNGQPLDTANGDGQWQPMVLSEGSLFFLSVGGGRRGQSHEGVYTCVA
RNSAGTATSRNASLYIAVLQEEFTVQPSDVEVAEGEVAILNCGPPMGHPEPNIIWKNNGL
PINTSNHHYTLLSGKLIIAPAEKNHSGAYVCVASNTVGVRESRAARLSVLGKPVLVLKPE
NVSVRLGESAQFYCQAKGDPPPSVVWSREQGPLPNGRYLVNPDQTLQIHYVTAQDAGKYT
CTAVNDAGVVTASAQLRVEEAASTQQKDLHKELSALRVALENVTIMAPGSNISQVQWKLQ
FLPSQPHYLDGFEVLCRSLLPASSDWVAKKVTLPNFQTQVGPLKRGYKYEFKVRPYGSNL
YGRESNTRHLRVPETVPSASPLAVSITVSHEQNNTIHLSWEPPPHETHNGIIQGYQVWCV
ESEQQQYQNWTVNSDQHSLDISTLKPGKRYWLTIAAVNGAGVGMLSDPHGFVINPQMGGP
PESDSQRRDLSQVLALFQDPVLIGSIGALLWCILMIAVVYLFRRHSKTGHLIPGHGRAKG
LRRLANEDLIIKHRMAAPDSPWISGGWRPAFSQKYQDLWAQGQKHPGIRSTSLPVSSKKD
SSCLDSAVPIVTDSCGVYGTFYVDLMANGLKTFNSPGRRPKMPHGLPHQQGAETIQIFTQ
PVAKTAPIGSHEVLPWKQVIRPQPKMGVLRESWEKNQSKQELHAVNSVPIVPTRNQACPS
SVYKQRLSHVPSGRHGGHTECGKVAGCPRLLHYSASVHLLDMLPPPPPIPTDNAMDTHSL
TSDEGSSRSTKFTMDMGSLPSVCAASGHHEQSGSTKNNNHCPSYSHLSTASYSMSLDEED
DGTLTAQEATQYLELSPKPDRLSALPEQRPSLPHPFSSNLGYICRPVCSIQLEDDPASEE
PEAPPIGLRRARLQSTPSSCYSEWDSSLWNTWSSVTDDNMASTRTSLISSVDSCYTTDST
NFARLLAVAAETMSAASLSDFSPPASPLSALYPPFRAEGDSFGELEPVPAWDWSMAWVEE
MEAKYRAHYPDRNTKPFNA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggtacagtggagctgtggtaggttctggtcttgcatccgggtggtgttgacttgtgga
ctgaagatgcgagtcagtgcgtggcttctctgtgtgtcctcgctctacacctgggcagag
ttttcacaaagttgcacgtgccaagacatctgtgcaacagagccaggattggacaagagg
tcaaagactcgggtcaaggagcacgttcgtcacagtgttggacaccagcgcgcgtttcac
aggagcaggccacaccgcaggaaaggttccagagttcatgcagaggaaacgccaccccgt
gtcgtccaccacccctctgatgtggtggtgaaagttggggatcccgccacgctctcctgc
cgggtggatggcaacccgaagccaaccatcgagtggctgcgcaatggtcagcccctagat
acagcaaatggagatgggcagtggcagcccatggttttgtcagagggtagcctcttcttc
ttgagtgttggagggggcaggcgaggtcagtcacatgagggtgtctacacctgcgtggcc
aggaacagtgcggggactgcgaccagtcgtaatgcatcactttatattgcagtgctgcag
gaggagttcactgtgcagcccagtgatgtggaggtggcagagggcgaggtggctatctta
aactgtggccctccaatgggacaccctgaacctaacatcatctggaagaataatggcctg
cccatcaacaccagtaaccaccactacactttgctgagtgggaagcttatcattgctcct
gcagagaagaaccactctggtgcttatgtgtgtgtggccagcaacactgtgggagtgaga
gagagcagggcggctcgactctctgttctgggcaagcctgttctggtgctgaagccagag
aatgtgtcggtgagactgggggagtctgctcagttctactgccaagctaaaggtgaccct
ccaccttctgtggtctggagcagagagcaagggccactgcccaacggcaggtatcttgta
aacccagaccagactctccagatccattatgtgacagcccaagatgctgggaagtacacc
tgcactgctgtcaatgatgcaggtgttgtcactgccagcgcacagctacgtgttgaagag
gctgccagcactcaacagaaagaccttcacaaagagctgtcagccctgcgagtggctcta
gaaaatgtcaccatcatggcccctgggtccaacatatcccaagtacaatggaagctccag
ttcctcccatctcagccacattaccttgatggctttgaggttctctgtcgctctctgctg
ccagccagctcagactgggtggcaaagaaggtgacactgcccaatttccagactcaagtg
ggccctttgaagagaggctacaagtatgagttcaaggttcgtccctatggcagcaacttg
tatggaagggagagcaacacccggcacctcagagttccagagacagttcccagtgcctct
ccactagctgtgtccataacagtgagccatgagcagaataacaccatccacctgagctgg
gagcctcctcctcatgaaactcacaatggtatcatccagggataccaggtgtggtgtgtg
gagtctgagcagcagcagtaccagaattggacggtaaacagtgaccaacacagccttgat
atatcaacgctcaaaccagggaaacgatactggctcaccatagcagctgtcaacggagct
ggagtaggaatgctgagtgaccctcatggatttgtcatcaacccacagatgggtggtccc
cctgagtcagacagccaaagacgggatctgtcacaggtcttggccctgtttcaggaccca
gtgttgatcggcagcattggtgcactcctgtggtgtattctgatgattgcagttgtctac
ctcttcagacgccacagcaagacaggtcacctgataccaggacatggaagggcaaaaggt
ttgcgtagactggcgaatgaagatctcattattaaacacagaatggcagctccagactcc
ccatggatttctggaggctggagacctgccttcagccagaaatatcaggacttatgggcc
caaggtcagaaacatccagggatcaggagcaccagcctcccagtctcatccaagaaggac
tccagctgcctggactcagctgtccccattgtgaccgacagctgcggtgtctatggcact
ttttatgtggacctgatggccaatggcctgaagacctttaatagccctggacgtcgccct
aaaatgccccacggtctgccgcatcagcaaggagctgagaccattcagatattcacccag
cctgtcgcaaagactgcacccatcggaagccacgaggtgctgccatggaaacaggttata
cgcccccagcctaagatgggtgtactgagggagtcatgggaaaaaaaccagagcaagcaa
gagttgcacgcagtgaacagtgtccccatagtgccaaccagaaaccaggcttgcccatcc
agtgtctacaaacagagactcagtcacgtaccatcaggccgacatggtggacatacagag
tgtggtaaagttgctggctgtcctcgtctgctccattactctgcatcagtacacctactg
gacatgctcccaccaccaccaccgatacccacggacaacgccatggacacacacagtctg
acctcagatgaaggctccagtcgttccacaaagtttacaatggacatgggttctctccct
tcggtgtgtgctgcatcaggccaccatgagcaatcaggatccaccaagaacaacaaccac
tgcccgtcctacagccacctgtccactgcgtcatattccatgtcactggatgaagaagat
gatggcacactgacagctcaggaagccacccagtatcttgagctcagccctaaacctgac
agattgagcgccctgcctgagcagcgtccctccctgcctcatcctttctcctccaacctg
ggctacatctgcaggccagtatgctccattcagctggaggatgaccctgcctctgaggag
cccgaagctccaccaattggcttgcgacgtgcccgccttcagagcacaccttcctcctgc
tacagcgaatgggacagctcactgtggaacacctggagctctgtcacggatgacaacatg
gctagcacccgcaccagcctcattagctctgtggacagctgttacaccactgacagcacc
aactttgcccgattgttggctgtggcagcagagaccatgagtgcagcctctttgtcagac
ttctctccaccggcctcccccctcagtgccttgtatccaccatttcgtgcagaaggcgac
tcgttcggggaactggagcctgttcctgcgtgggactggagcatggcctgggtggaggaa
atggaggctaagtacagagcccactatcctgacagaaacaccaaacccttcaatgcttaa
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integrated database retrieval system
