Lates calcarifer (barramundi perch): 108893820
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Entry
108893820 CDS
T04895
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108893820
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108893820
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108893820
NCBI-ProteinID:
XP_018547717
UniProt:
A0A4W6DBT5
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Position
LG20:4361940..4387367
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AA seq
869 aa
AA seq
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MKGGGRGKEPPVAGEVTGKRPKRKCLQWHPLLSKKALDFSEEEEEEDEEELEKQPMLCGQ
DQGSQMECGSTTEEVEEDSNEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILAD
WWAVLEPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTSKPVKSPSCQPVSNPRKKIWSFS
SNPSKDSTTAKKVPKTDSMPQLNFAMADPTKMGGLSMLLLAGEHALTNREIPSSTKPSLP
ETASEGDCFPGDKEEMLSGTIPNRVPDVTESRVKSALSPLAESSMSVVPEGKPCRQSALF
QLAEMCLASEAGKMDTGVSQPEDSSSAASFQKTTVKPEIKEEKADTNDCPPSSYTSALLP
LLSTVSSTSTDAIPPQLSSQNACVKKKSKKKEVAKSNDNSEITCTAKKIVKKCNHAESNV
DSVFNTIEAVAKGAWKDTEEKPKKKIQSSPSGGNSAFPKKKSKPKVKTSVKDKEEEIDED
SGQCEQNSSSEVEMKEEVTHVSPKSEEASRGSTDLQGSMAELHHSPCSPSPTKLKEEDKG
KERQSEVTCESSTENRGSRKSERSCKGALYKTLVSEGMLTSLRANIDRGKRGAFRASDHD
ANWCDDSWTVPQLVPNNPKKLKKSKSKDESSQGLGKLEEEFEKKFNSLPQYSPMTFDKKG
TTVAKKRKTDSSTVQEEASRVGKGPSPSQKKTSFHKIVRKHKHKKERPGAVDKAVVQSDS
TMLDSASKAKICAPLAIMCPDVQGSTSMEMLVGSQKRKARKTKITHLVRTADGGVSPAEE
DKTRDLNQEQDKKPLLHQNLCNEKGCYSNPRAEEAERSTVTQELPAFFSLAALAEVAAME
NVHRGQRGLAESQKKELAQTPVLISCADQ
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtggaggaaggggtaaggagccacctgttgcaggggaggtcactggcaagcgc
cccaaacgcaaatgcctgcagtggcacccacttctctccaaaaaagctctagatttctct
gaggaggaagaggaagaagatgaagaagagctggagaagcagccaatgttgtgtggccag
gaccaggggtcacagatggagtgtggaagcacaacagaggaagtggaggaggattcaaat
gaacagcgagcacggcggccaatgaatgctttcctcctcttctgcaaacgccaccgttct
ctggtgcggcaggaacaccctcgcctggacaaccgcggggccaccaagatcctggctgac
tggtgggctgtgctggagcccaaagagaagcagaaatacactgacatggccaaggagtac
aaggatgccttcatgaaggcaaacccgggctacaagtggtgtcccaccaccagcaaacca
gttaagagcccttcctgtcagccagtcagcaatccccgcaaaaagatttggtccttctct
tccaacccatctaaggactccaccactgccaaaaaagtgcccaaaactgacagcatgcca
cagttaaactttgccatggcagatcctactaagatgggaggccttagcatgctgctgtta
gctggggaacatgccctcacaaacagggagatcccttccagcactaaacctagtttacct
gagacagccagcgaaggggactgctttccaggggataaggaagagatgttgtctggaaca
ataccgaacagagtgcctgatgttactgaaagcagggtcaagtctgctctttccccactg
gcagagtcatctatgtctgtggtacctgagggaaaaccatgcagacagtcagctctcttc
cagcttgctgagatgtgcctagcgtcggaagctggaaagatggacacaggtgtatctcag
cctgaggacagctcctctgcagcctctttccagaaaactacagtcaagccagaaatcaag
gaggagaaagcagacactaacgactgtcctccctcctcgtacacatcagccctcttacct
ttgctctctactgtcagttctacctccactgatgccattcccccacaactcagcagccaa
aatgcatgtgtcaaaaaaaagagcaagaaaaaagaggtggccaagtcaaatgataacagt
gagataacttgcacagcaaagaagatcgtcaaaaagtgtaaccatgcagagtcaaacgta
gacagtgttttcaatacaattgaagcagtggccaaaggagcctggaaggacactgaggag
aagcccaagaagaagatccagagcagtcctagtggtggaaattctgcttttcccaaaaag
aagagtaagcccaaagtaaagacctctgtcaaagacaaagaggaggagattgatgaagac
agcgggcagtgtgaacagaacagttcctctgaagtggagatgaaggaagaggtgactcac
gttagtcctaagtcagaggaagcaagtaggggaagcacagaccttcagggcagcatggca
gaactccatcactctccctgcagcccctcacctactaagctcaaagaggaggacaagggg
aaggagaggcagagtgaagtgacctgtgagtccagcacagagaaccggggctccaggaaa
tcagagcggagctgtaaaggagccttgtataagacccttgtttctgaggggatgctgact
tcactgagagccaatattgaccgaggtaaaagaggtgctttccgtgcttctgatcatgat
gcaaactggtgtgatgacagctggacagttccacagttggtacctaataaccccaagaag
ctgaaaaagtccaagtccaaagatgaatcttcacagggcctagggaaactggaggaggag
tttgaaaagaaatttaacagcctaccacagtatagcccaatgacatttgataagaagggg
actactgtcgcaaagaagaggaagactgacagctccactgtccaagaggaagcctctaga
gttggaaaagggccatctccatcacagaaaaagacttcattccacaagattgttaggaag
cacaaacacaaaaaggagagaccaggtgcagtggacaaagcagtggtacagagtgattcc
accatgctggattcagcttcaaaagccaaaatatgtgccccccttgccataatgtgccca
gatgtccagggctccactagtatggagatgctagttggtagccagaagaggaaggctagg
aagaccaagatcacacacttggtgcgcacagctgatggcggtgtgtctccagctgaggag
gacaaaactagggacctgaaccaggaacaggataagaagccattactccaccagaattta
tgcaatgaaaaagggtgctacagtaatcccagagcagaggaggcagagaggagcaccgtt
acgcaagagctacctgctttcttcagtttggcagcccttgctgaggtagcagccatggaa
aacgttcacagaggccagagaggcttggctgagagtcagaagaaagagcttgcccagact
ccagtcctcatctcctgtgctgatcagtga
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