Lates calcarifer (barramundi perch): 108893829
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Entry
108893829 CDS
T04895
Name
(RefSeq) transcription factor Sox-2
KO
K09271
transcription factor SOX15/30
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108893829
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108893829
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108893829
NCBI-ProteinID:
XP_018547742
UniProt:
A0AAJ7Q5Z7
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Position
LG20:19774842..19777103
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AA seq
392 aa
AA seq
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MKMERRTPKGIGKTVQENPDQEPATSASQLHHTGDGQQCYVSSVGENTQFGHGKLPPIST
FFNKLPLSQGGSAVSGRAEGGVKSETVPSGCQVREVKPLPSAEHALTGRLDVLKTLAAGE
PLSSDPVHVADTSPSLGGTSGALISFTIPPTEEDLRQMQPCQDRNGHIKRPMNAFMVWSR
IHRCALRRACPGVSLTDASIQLGCEWSKLSIEQKRPYYEVAEQLKNMHKQLFPDYEFCPQ
RRKGREHLSLGQGARQDPGVSSFVSQSTIPAQSELQDLAMYLYPTLMPCTVGYYPYPSFC
PYHAVGLYSRVHIQCSRHQNACSSMEEVQNYPDTHQPRGATALAIEHHLADVSNEFLSES
TATAESLAQPDIVTNSKVEVKCEDDVDIVGLL
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggaaaggcgaactccaaaaggaataggaaagacggtccaagaaaacccagac
caggaacctgcgacctccgcctcccaactacatcacaccggagacggacagcaatgttat
gtgtcctcggttggagaaaatacccagtttggacacggcaagctaccgcccatatccacc
tttttcaacaaactaccacttagtcaaggtgggtcagcggttagtggtcgtgctgagggc
ggagtcaagtcagaaacagtcccttcaggttgccaggttcgtgaagtgaagccgcttccg
tccgctgaacacgctctcaccgggaggctggatgtgctgaagactctagcagctggggaa
cccctgagctcagatccagtccacgtcgccgacacctccccaagtctcggaggtactagt
ggtgcactcatcagttttaccatcccgccaacagaagaagatctaaggcagatgcagcct
tgccaagacaggaatggacatattaaacgaccgatgaatgccttcatggtgtggtctcgt
atccaccgatgtgccctgcgcagagcctgccctggagtcagcttgacagacgccagtatt
cagctgggctgtgagtggtccaagctaagtatagaacagaagaggccctactatgaagtg
gctgaacaactgaaaaacatgcataagcagctattccctgattatgagttttgcccccag
agaaggaaaggcagagaacatttgtctttaggacagggagcaagacaggaccccggcgtt
tcctcttttgtctcacagtccacaattccagctcagtcagagttgcaggatcttgccatg
tacctgtaccccaccctgatgccctgcacagtgggctactatccttacccatctttttgc
ccatatcatgcagtgggcctgtactccagggtccacatccagtgttcaagacaccaaaat
gcctgcagctccatggaggaagtgcagaattaccctgacactcaccagccgaggggcgca
acagctctggccatagaacatcatctagctgatgttagcaatgaattcctcagtgaatca
actgcaacagcagagagcctagcccagcctgacattgtcaccaacagcaaagtggaggtc
aaatgcgaggatgatgttgatattgttggactgctttaa
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