Lates calcarifer (barramundi perch): 108893846
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Entry
108893846 CDS
T04895
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108893846
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
108893846
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
108893846
NCBI-ProteinID:
XP_018547770
UniProt:
A0A4W6FC90
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Position
LG20:11190322..11205254
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AA seq
847 aa
AA seq
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MTAWSMVEKLKMEKRPCREENIDSSEAQHATDESEDGSSSESESEEQQRQRVQVNSSSSG
KKREPLAVTKPHRQLCRSPCLDRPSFSQSSTVQDFREDETSAGPGIKPASDREYQTKMDF
ALKLGYSGEQVETVLNKLGAAALINDVLAELVRLGNKVEPESQPCSSTATLISRSPCVKE
TVSPEVSVEDESVDTFDNLRPIVIDGSNVAMSHGNKEVFSCRGIQLAVEWFREKGHKDIT
VFVPAWRKEQSRPDALITDQEILRKLEKDKILVFTPSRRVQGRRVVCYDDRFIVKLAYDS
DGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRP
VVPEHKKQPCPYGKKCTYGHKCKYYHPERVNQPQRSVADELRAFAKLSAVKTMSEGALAK
CGTGPATAKGDSNSEAKRVAPKRQSDPSIRSVACEPPEALSVIRKSETNSVPSLVSALSV
PTMQPAKSHAAGALNTRSASSPVPGSLQFAHSSLEHMSSVQYPPILVTNSHGASVTYSEQ
FPKYDSVSDHGYYSLHSDFSNMSMSSMHNVDSFCSMEHEHGVYQRNPSHCPESCLSHSNS
DSFSSYGDLYPSSVDSSLEESMKGQQQSPAQGRMQAFSHGFRHEALTRVQSYGPEEPKQG
PRKQSGSHLAPHIQHATVGARSSCPGDYPLTQNVLPPLSSQPTRSLGMTRMDSISDSRLY
DSNPMRQRRPPLCREQHASWDPLPCGNESYGYHSYPLSNSLMPCCERVMVRSMPDKMEQI
WSSPWETPSAAEHQERYVIPDHQYQTYRNLCNIFPAYIVHSVMEKNPHLTDPQQLAAVIV
TKLRSSH
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatggtccatggtggagaaactcaaaatggaaaaacgcccatgcagggaggag
aacattgactcaagcgaggcccagcatgccactgacgagtctgaggatggaagcagttca
gagagcgagtcggaagagcagcaacgccagagggttcaggtgaacagcagcagcagcggt
aagaagcgggagcctttggctgtcacaaaaccccatcgacagctctgtcgctctccatgc
cttgaccgccccagtttttcccagagtagcactgtgcaagattttcgtgaggatgagacc
agcgcaggacctgggatcaagcctgccagtgacagggagtaccagaccaagatggacttt
gctttgaagttgggctattcgggagagcaggtggagactgtgctcaacaagttgggggcg
gctgctttaattaacgacgttcttgctgagttagtgaggcttggaaacaaagtagagcct
gaaagtcaaccgtgcagcagtacggccacattaatatcacggtccccctgtgttaaagag
actgttagtcccgaagtgtcagtagaagatgaatctgtggataccttcgataacctcagg
cccatcgtcatcgatggctcaaacgtggcaatgagccatggaaacaaagaggtattctct
tgtcgtggtatccaacttgctgttgaatggtttcgggagaaaggacacaaagacatcact
gtgtttgtcccagcatggaggaaggaacagtcgaggcctgatgccctcatcacagatcaa
gaaatcttacgcaagctggaaaaagacaagatcctggttttcaccccgtctcgaagagtt
caaggcaggagggtggtgtgctatgatgatcgcttcatagtgaagctggcttatgattct
gatggaattattgtgtcaaatgacaactacagggacttgcaaaatgagaagccagagtgg
aagaagttcatagaagagcgtctcctaatgtactcatttgtcaatgacaagtttatgcca
cctgatgatccactgggaagacatggtccaagtctagaaaatttcctccgtaagcgtccc
gttgttccagagcacaaaaaacagccctgcccctatgggaaaaagtgcacatatggacac
aagtgcaagtactatcatccagagcgtgtcaaccagccgcagcggtcagtggctgatgag
ctgcgagcctttgccaaattgtctgcagtgaagacaatgagtgagggggctttagccaaa
tgtggtactggtccagcaactgcaaagggggacagcaactctgaggccaaacgtgtggcc
cctaaacgtcagtctgaccccagtattcgttcagtggcctgtgaacctccagaggcactg
tccgtcattaggaagtctgagacaaattcagtgccttccctcgtgtctgctctcagtgtg
cccaccatgcagcctgccaaaagccacgcagctggggccttgaacacacgatcagccagc
agcccagtgccaggttctttgcagtttgcgcacagttctctggagcatatgtctagtgta
cagtatcctcctattttagttactaatagtcatggcgcttctgttacatacagtgaacag
ttcccaaagtatgactcagttagcgaccatggatattattcactgcacagtgatttttca
aacatgagcatgagcagcatgcataatgttgatagtttctgtagcatggagcacgagcat
ggtgtgtatcagagaaatcccagccactgccctgaatcctgtctcagccattcaaacagt
gactcgttctcctcttacggggacctgtacccaagctctgtggacagtagcttagaggag
agcatgaaggggcagcagcagtctcctgcacagggtagaatgcaggctttctctcatggg
tttcgtcatgaagcactgactagggtacagagctacggaccagaggagcccaagcagggc
ccccgtaaacaatctggatctcatctagcaccacacatccaacatgctacggtgggagcc
aggtccagctgccctggagactatcccctgactcagaatgtcctaccacccttgtcctca
cagcctacacggtctcttggtatgactcgtatggacagtatatcagattcaaggctatat
gacagtaacccaatgagacagaggcgacctccattgtgccgcgagcagcatgcaagctgg
gaccctctgccttgtggtaatgagtcctatggatatcattcatacccgctgagcaacagc
ctgatgccgtgttgcgagcgggtgatggtccgcagcatgccagacaaaatggaacaaatc
tggagctcaccatgggagaccccatctgcagctgaacaccaagagcggtacgttatccca
gaccaccagtatcaaacatatcggaacctttgtaacatctttcccgcttacatagttcac
tcagtaatggagaagaaccctcatttgacagatccacaacaacttgcagctgttattgtt
acaaaactgaggtcaagccactga
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