Lates calcarifer (barramundi perch): 108893861
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Entry
108893861 CDS
T04895
Name
(RefSeq) cell adhesion molecule DSCAML1 isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108893861
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
DSCAM family
108893861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
Ig_5
C1-set
Ig_6
C2-set_3
Sp38
Receptor_2B4
ChitinaseA_N
DUF1461
DUF6034
Motif
Other DBs
NCBI-GeneID:
108893861
NCBI-ProteinID:
XP_018547792
UniProt:
A0AAJ7Q6A5
LinkDB
All DBs
Position
LG20:11656336..11707442
Genome browser
AA seq
2116 aa
AA seq
DB search
MGGAEAPLISPPCLAGQQGWRDLRGAQSPVQHGDPPGQKTAPHTCQDCQIFLKNIPAIYG
MWLVTLLLLYSLQEVHSEDVGSTRLYFVNASLQRVTYSSSVGVSLPCPAGGTPSAILRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAYNSYIHDNDYFCTAENQAGKIRSPNIRIK
AVFREPYTVRVADQRSMRGNVAVFKCLIPAAVQEYVSVVSWERDTVSIVPGNRFSLTSFG
ALYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPNESSPTILDSFQAGEVHAG
QSIELPCIAGGYPSPTVRWLKDGRPLPSDARWTRRLTGLTISDLRQEDSGSYACEVTNSF
GSKEVSGQLHVIDPLRVTLSPKNLKTGISSTLFFTCTVEGSPEYTITWYRNTEPIVPDQH
ISIQGQHNDTLQITAAQKFHSGAYQCFASRKGHTAQDFSIILLEDGTPRIVSSFSERVVN
PGEPFSLMCAAKGAPPPSITWTLDDEPVVRDSTYKTSQYTLSDGLTVSHVNVSSPLIRDG
GVYRCVARNSAGSAEYQARINVRGPPRIRPMRDITAVAGRNTYITCRVIGYPYYSIKWLK
DGMQLPDNHRQVVFENGTLRLTDVQKGADEGTYLCSVLIQPQVSINQTVHVTVKVPPLIQ
PFDIPSTSVGKLMYIACVVSSGDMPIRITWHKDGQLIVPGSASGVAIETKEFMSSLQISK
VTLKHNGNYTCIASNAAATVSWERQLIVTVPPRFVVQPNNQDCIYGKAGVLNCSVEGYPP
PKVMWKHAKGVGNPQQYHPVPLTGRIQIMSNGSLLIRHVLEDDRGYYLCQASNGVGSDIS
KSMILTVKIPAMITSHPNTTMARKGQTKELNCTARGEQPIIIRWERGDTVIDAERNPRYS
ITINKKGDEVISTLKLNPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPELEVREV
KDRSMNLRWIQRFDGNSIITSYDIEYKNKSDSWDHMYTTRNISPTNNQANIVELHPACVY
SIRMYSYNKIGRSLPSKELTISTEEAPPDGPPMDVVLQPMTSQSIRVTWRAPKKELQNGV
IRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS
TEINATTLEDVPSEPPQNVRAISVTSDEAVITWAEPPRLTLHGVLKGYRVVFWSLFPDGG
GCCGGRAQWPMQKWGEMQNITTTREQVELRGLEKFTNYSVQVLAYTQAGDGVRSNVLYIQ
TREDLPGPPAGIKAVPSSPSSVVVSWLPPHKPNGVIRKYTIYCSSPGSGQPAPSEYEANP
EMLFYRITHLTRGKQYHIWAAAVTTAGRGNISAKVTVEPAGKVPAKILSFGGTVTTPWMK
EVRLPCSSVGEPAPTIKWTKDSEDSAIPVTADSQRQILSNGTLVLRSVKAEDSGYYTCTA
TNTLGFDTIIVNLVVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIRGFVLQYSVDNT
EEWRDVFISSSERSFRLDNLRCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPVFNKDQ
PLLTHINSTHAGLNLQGWTSGGCPITDLMLDFRPKGTWAWQSLKANSTTQLFLSELREAT
WYELKMKACNSAGCGNQSSQFATTDYDGSTIPPIKSARGEGDDVKKLFSIGSPVILVTLG
VALLFIIRKKRKEKRLKRLRDAKSLAEMLISKNNRSIDTPVKGPPQGPRLHIDIPRVQLL
IEDKEGIKQIGEDKAAVPVTDTEFSQSVNPQNFCTGVSLHHQALIQNSGPLIDMSDIRPG
TNPVSRKSIKSAHSSRNRYSSQWTLSRPSQSQSTASARTLTSDWRTMGSHGITATESDSY
SASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFTITECFISDSSSDQ
MTTGTNDPADSMTSLSTPSEPGICRFTASPPKPQDYDRGKNVAVPIPHRANKSEFCNLPL
YMKTDPFFRKQGELHDPCPAVPPREASIRSLTQRAYHTQGRHKTLDPAKQQALTLGHSGL
GSLGSSSGTATLPQRTLTMPSSNTAATASTSSTSSNPTNSNKVGGSRDSLLESSSSALGR
LQKQSVGAYSKSYTLV
NT seq
6351 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggctgaggcgcctctcatttcccctccatgcttagcggggcagcagggctgg
agagacctccggggagcacagtcgccagtccagcacggagacccgcctggccaaaaaacc
gcgcctcacacttgccaggattgccagatattcctgaaaaatatacctgctatttatggc
atgtggcttgtaactttactcctgctgtactctctccaagaagtacacagtgaggatgtg
ggctctaccaggctgtactttgtgaatgcctccctgcagagggtaacctactccagctcg
gtgggggtgtccctgccctgtccagcagggggcacccccagtgccatactgcgctggtac
ctggccaccggcgacgacatctacgacgtgccccacatccgccacgtgcacgccaatggc
accctacaactgtaccccttctcgccctccgcctacaacagctacatccacgacaacgac
tacttctgcactgccgaaaaccaggccggcaagatccgcagccccaacatccgcatcaaa
gctgttttcagggagccctacaccgtgcgggtggcagaccagcgctcgatgcggggcaac
gtagctgtgttcaagtgcctcatccccgctgccgtgcaggagtacgtcagcgtcgtgtcc
tgggagagagacactgtttccattgtcccaggtaacaggttctcgctgacgtccttcgga
gctctttacatctctgatgttcagaaggaggatgccctctctacataccggtgcatcacc
aagcataagtacagcggcgagacacggcaaagcaacggagccaggctctccgtaatggac
cccaacgagtcctcgcccaccatcctggacagtttccaagcaggggaggtgcacgctggc
cagagtatcgagcttccctgcatagcaggaggttacccaagccccaccgtgcgctggctg
aaagatggtcgcccgctgccctcagatgcccgctggacacggcgtttgacagggctgacc
atcagtgacctgaggcaggaggacagcggcagctacgcctgcgaggtcaccaacagtttt
ggctcaaaggaggtgtctggacagcttcacgttatagatccactacgcgtgaccttatcc
cccaagaacctgaaaacgggcatcagcagcacactgttcttcacctgcactgtggagggc
tctccagaatacaccatcacctggtacaggaacaccgagcccatcgtcccggaccagcac
atctccatccagggacaacacaatgacaccctgcagatcactgcagcacagaagttccac
tctggggcctaccagtgcttcgcctcccgaaagggccacactgctcaggacttttccatt
attctgctagaggatggtactcctcgtattgtgtcttccttcagcgagcgggtggtgaac
cccggcgagcctttctccctcatgtgtgctgccaaaggagccccaccgccctccatcacc
tggactctggacgacgagcccgtggtgcgagactccacctacaagaccagccagtacacc
ctgtcggacggcctgactgtgtcacacgtcaacgtcagcagcccgctcattcgagatggg
ggagtgtatcgttgcgtcgcacgcaactcggccggtagcgccgagtaccaagcgcgcata
aacgtaagaggtccacctcgaatcagacccatgcgggacatcaccgcagtggcgggcagg
aacacctacataacgtgccgtgtgattggctacccgtattactccatcaagtggctgaag
gacggcatgcagctgcctgataatcatcgtcaagtggtgttcgagaacggcaccctgagg
ctgacggacgtgcagaagggcgcggacgagggcacctacttgtgtagcgttctgatccag
ccccaggtgtcaatcaaccagaccgtccacgtgactgtcaaagtgccgccgctcatccag
ccctttgatatcccctctacctcagtggggaagctcatgtacatcgcctgcgtggtgtca
tctggggacatgcccatacgcatcacctggcacaaagacggccagctcatcgtgccaggc
tccgcctctggcgtcgcaattgagaccaaagagttcatgagctccctacaaatctccaag
gtgacactgaagcacaacggaaactacacctgcattgccagcaatgctgctgccaccgtc
agctgggaaagacagttgattgttactgtgccaccacgttttgtggtgcagcccaacaac
caggactgtatctacggcaaagctggtgtcctcaactgctctgtggagggttacccacca
ccaaaagtcatgtggaaacacgccaaaggtgtaggaaaccctcagcagtaccacccagtc
cctctaactggccgtatccagatcatgtcaaacggctctctgctcatccgacatgttctt
gaagacgatcgagggtactacctctgtcaggcctccaatggagtgggctcagacatcagt
aagagcatgatcctcactgtcaagattcctgccatgatcaccagccaccccaacaccacc
atggcgagaaagggccagaccaaggagctgaactgtacagcgcggggcgagcaacccatc
ataatccgctgggagagaggggacaccgttatcgatgcagaaaggaacccacgttactcc
atcaccatcaacaagaagggggacgaagtcatctccaccttaaagctgaacccagccgag
agaggagattctgtcttcttctcctgccatgccatcaactcctatggagagggtcgaggg
ctgatccaactcactgtgcaagaaccaccagatcctccggagctggaagtgagggaggtg
aaggacaggagtatgaacctgcgctggatccaaaggtttgatggaaacagcatcatcacc
agctatgacatagagtacaagaacaagtcagactcctgggatcacatgtacacaaccagg
aacatctcacccaccaacaaccaagccaacattgtagagctgcacccggcctgtgtttac
agcatccgcatgtactcctacaacaagattggccgcagccttcccagcaaagagctcacg
atcagtaccgaagaagcgcctcctgacgggccaccgatggatgtcgtcctccaaccgatg
acatcccagagcatacgggttacatggagggctcccaagaaggagctgcagaatggggtg
atccgaggctaccagattggttacagagagaacggtccaggcagcaatggccagtacagc
atagtggagatgaaagctacaggggacagtgaagtgtacaccttggacaacctaaagaag
tttgcccagtacggggtagtggtccaagccttcaacagagctgggaccggcccatcaagt
actgagatcaacgctaccacactggaagatgtgcccagcgagcctccgcagaacgtgcga
gccatctcggtgacatcggacgaagcggtgatcacgtgggcagagcctccacggctgacg
ctgcacggtgtgctgaaaggctaccgggttgtgttttggtccctcttccctgacggaggt
gggtgctgtgggggccgggcccaatggccaatgcagaaatggggagagatgcagaatatc
actacaactcgtgaacaggtggagctgcgaggattggagaagttcaccaactacagtgtt
caggtgctggcctacactcaagctggagatggggtccgcagcaatgtcctgtatatccag
actcgtgaggaccttcctggtccgccggctggcatcaaggcagttccttcctctccgagt
agcgtggttgtatcctggttgcctcctcacaaaccaaatggtgtcatccgcaagtacacc
atctactgctccagtccggggtctggacagccagcgcccagcgagtacgaggccaacccg
gagatgctcttctaccgcatcacgcaccttacccgtggcaaacaataccacatctgggct
gcagccgtgacaactgccggccgtggcaacatcagcgcaaaggtcacagtggagcctgct
gggaaagtcccggcaaagatcctgtcctttgggggcacagtgaccacaccctggatgaag
gaagtgcgtttgccctgcagctcagtgggagagccagcccccacgattaaatggaccaaa
gacagtgaggactctgccattccagtgacagctgacagtcagcggcagatcttatccaac
ggcacactggtgctacgttcggtcaaggcagaggattctgggtactacacctgcacggcc
actaacacactgggctttgacaccatcatagtcaatcttgtggtgcaagttcctcctgac
cagcctcgtctgactgtctccactacctccacctcctccatcaccctggcttggatccct
ggggacaatggaggaagctccatcagagggtttgtgctgcagtattctgtggacaacaca
gaggaatggagggatgtgttcatcagctccagcgagcgttccttcaggctggacaatctg
cggtgcgggacctggtacaaggtcaagttggccgccaagaacagcgtgggctcagggcgc
atcagtgaaatcatcgaggctaagacccatggaagagaaccagtgttcaacaaggaccag
ccgctgctcacccacatcaactccactcacgctgggctcaacctgcagggctggaccagc
ggtggctgccccatcaccgacctgatgctggacttcagacccaaaggcacctgggcctgg
cagagcctcaaggccaactccaccactcagctcttcctcagcgaactgcgtgaggccacc
tggtacgagctcaaaatgaaggcctgcaacagcgcagggtgcggcaaccagagctcccag
tttgccaccacggactacgatggcagtacaatccccccaattaaatcagctcgcggagag
ggcgatgatgtgaaaaagctcttctccatcggctctcccgtcatcctggttactctgggt
gttgctctgctcttcattatccgcaagaaacgcaaggagaagaggcttaaacgtcttagg
gatgctaagagccttgctgagatgcttatcagcaagaacaatcgcagtattgacactcct
gtgaagggccctcctcaaggaccaaggctccacattgacatcccacgtgttcagttactc
attgaggacaaggagggcatcaaacagataggggaggacaaggcggcagtgccagtgaca
gacactgagtttagccagtcagtgaatccacagaacttctgtacaggcgtgtctctgcac
caccaagccctcatccagaattcagggcctttgattgacatgtcagacatccgcccaggc
acaaaccctgtgtccaggaagagtataaaatcagctcacagctccagaaacagatactcc
agccagtggacactgagccgaccgagtcagagccagtcgacggcctcggcgcgaactctg
acctcagactggcggacgatgggctctcatggcatcaccgcgactgagagcgacagctac
agcgccagcctctcccaagacacagataagggtcgaaacagcatggtgtcgacagagagc
gcctcctccacctacgaggagctggcaagggcctacgagcacgccaagctggaggagcac
ctgcagcacgccaagttcaccattacagagtgtttcatctccgatagctcatctgaccaa
atgaccacaggtaccaatgacccggcagacagcatgacctccctcagcacgccatctgaa
ccgggcatctgccgcttcacagcctcaccgcccaaaccacaggactatgaccgtggcaaa
aatgtggctgtgcccatcccccaccgcgctaacaaaagtgaattctgcaacctacccctc
tacatgaagacagacccattcttccgcaagcaaggggaactgcatgacccctgcccggct
gtgccaccgcgggaagcctcaatccgcagcctgacgcagcgggcgtatcacacccagggt
cgtcacaagactctagaccctgccaagcagcaggccctgacgctgggccattctgggctg
ggcagcttgggttcgagctcgggcactgccaccttgccccagaggactctcaccatgccc
agctccaacactgcagcaacagcttccacctccagcacgagcagcaaccccaccaacagt
aacaaggtggggggctccagagactcgctgctagagagcagctcctctgcgctggggaga
ctgcagaaacagagtgtgggggcctactccaagtcatacacactggtgtag
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