Lates calcarifer (barramundi perch): 108893885
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Entry
108893885 CDS
T04895
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108893885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108893885
03036 Chromosome and associated proteins [BR:
lcf03036
]
108893885
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108893885
Coactivators
SAGA/TFTC/STAGA complex
108893885
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108893885
STAGA complex
108893885
TFTC complex
108893885
SAGA complex
108893885
SLIK complex
108893885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CENP-S
CBFD_NFYB_HMF
Bromo_TP
Motif
Other DBs
NCBI-GeneID:
108893885
NCBI-ProteinID:
XP_018547841
UniProt:
A0AAJ7VDC0
LinkDB
All DBs
Position
LG20:complement(12331775..12337518)
Genome browser
AA seq
638 aa
AA seq
DB search
MAEERRQKQCSVILPTESMKAMAESAGVGQLQEESCVALSEEVSYRIKEIAQDALKFMHH
GKRRKLTTSDIDNALKLKNVEPLYGFQSQEFIPFRFASGGGRELHFYEEREVDLSDIINT
PLPRVPLDVSLKAHWLSIEGVQPAIPENPPPAPKEQQKAESTEPLKIVKPGQEEEATIQG
KSQGATTADGKGKEKGLIRLKPRSTHELSVEQQLYYKEITEACVGSCEAKRAEALQSIAT
DPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAV
VTCIVSKQLCLRPDVDNHWALRDFAARLMAQSCKTFSTTTNNIQSRITKTFTKSWLDDKT
QWTTRYGCIAGLAELGPDVIKTLILPRLAVEGARIKAVMEGPVVSNIDKIGADHVQSLLL
KHCASVIAKIRPQPDNVEQYRQDYGYLGPMLCSHVMKARTQAALQAQQVNRTTLTITQPR
PTLSVSQSGISGSTGPRTPSIIKVPSSLTLMSPRPGTPSQPSPPAAKYIVMATSAGAAST
QQVITLSSSQSASPVTSTVPSATSTLQPLVKLEPGSGPGLTGSRPMQKYIVVSLPSSASS
SLEPKSSVLPTSISSTPLEAGVKMDRSESPGASTQSPH
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaacgacggcagaagcagtgttcggtcatcctgcctacggagtccatgaag
gccatggcagagtctgctggagtgggacagttacaggaggaaagctgtgtagcattaagt
gaagaagtcagctacagaataaaagaaattgcacaggatgctctcaaattcatgcatcat
gggaagagacgtaaattaaccaccagtgacatagataatgcactgaaactaaaaaatgtt
gagcccctttatgggttccagtcgcaagagttcatcccttttcgctttgcaagtggtggt
ggaagagagcttcatttctatgaggaaagagaagtcgacctcagtgacattataaacaca
ccgctccccagagttccactagatgtgtctctcaaagcccactggttaagtattgaagga
gtgcagcctgctattccagaaaacccaccaccagcaccaaaagagcaacaaaaggctgaa
tctacagagcccctcaaaatcgtcaaacctggtcaggaggaggaggctacaattcaaggc
aagagtcagggagcaacaactgctgatggcaaaggaaaggagaagggtctaataaggttg
aagccacgcagcactcatgaactgtctgtggaacagcagctctactacaaggagatcaca
gaagcatgtgttggctcctgtgaagctaagagagcagaagctctgcagagtattgctaca
gaccctggactgtaccagatgcttccaagattcagcacatttatttctgaaggagttcgt
gtaaatgtggtgcagaacaacttggctcttctgatttatctaatgcggatggtcaaagct
ctaatggacaaccccaccttgtatttggagaaatatctgcatgagctcatcccagctgtg
gtgacgtgtatagtgagtaagcagctgtgtttgcgaccagatgttgacaaccactgggct
ttacgagactttgccgctcgtctcatggcccaaagttgcaaaaccttcagtactacgacc
aacaacatccagtcccgtattaccaagacttttactaagagttggttggacgacaaaacc
cagtggacgacacgttacggctgcatcgctggactcgctgaactgggacctgatgtgatt
aagacgttgatccttcctcggcttgctgtagagggtgctcgcatcaaagccgtgatggaa
ggaccagtggtctccaatattgataagataggagctgaccatgttcaaagcctcttactg
aaacactgtgcaagtgttattgctaagatccgacctcagcccgacaacgtggagcagtat
cggcaagactacggttacctcggtccaatgctttgctcccatgtaatgaaagccaggact
caagcagcactgcaagctcaacaggtcaacagaaccacattaacaatcacacagcctcgc
cccactctttcagtctcacagagtgggataagtgggtcgacagggcctcgcactcccagc
atcattaaggttccaagctccctcaccctgatgtctcctcgaccggggaccccatctcag
ccatctccgccggcagcaaagtacatcgtcatggcaaccagtgcaggagcggcctcaaca
cagcaggtaatcaccctcagctcttcccagtcagcttcaccagtaactagcaccgttccc
agtgccacttcgaccttgcagcctttggtaaaactggagcctggcagtggccctggactg
acaggttcacgacctatgcagaagtacatagtggtatctctgccctcgtctgcctcttcc
tccttggagcccaagagctctgtgctaccaacctcaatttcctcaaccccactagaagca
ggggtgaagatggatcggtccgagtctcctggagcgagcacacagtcaccacactga
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integrated database retrieval system
