Lates calcarifer (barramundi perch): 108893910
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Entry
108893910 CDS
T04895
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
lcf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108893910
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108893910
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108893910
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
108893910
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
108893910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
SMC_N
AAA_29
RsgA_GTPase
DUF87
AAA_16
nSTAND3
MMR_HSR1
T2SSE
AAA_23
FtsK_SpoIIIE
MeaB
Dynamin_N
NB-ARC
AAA_30
Zeta_toxin
nSTAND1
Motif
Other DBs
NCBI-GeneID:
108893910
NCBI-ProteinID:
XP_018547891
UniProt:
A0A4W6BS67
LinkDB
All DBs
Position
LG10:complement(2927515..2960243)
Genome browser
AA seq
1510 aa
AA seq
DB search
MQKSPVEDANFVSKFFFWWMTPLLRKGFRKKLELTDVYKAPSFDLADNLSERLEREWDRE
VVSAKKKPKLMRALARCFFGPFAFFGVLLYLGEASKTVQPQISGRIIASFDPFHAPERSQ
GYYLALGLCLLFVARFLLLQPALFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFVWITPLQCILCTGLIWELIEVNGFCALASLTLLGIIQAW
LSQKMGPHRAKRAGMISRRLALTTEIVENIHSVKAYGWEEVMETIIKNIRQDEMTLTRKI
GSLRYFYSASYFFSAIVVIISAIVPHALSKGIILRRIFTTASYCIVLRMTLTRQLPGSIQ
MWYDTLALVAKIEDFLLKEEYRVLEYNLTTTELEMVNVSASWDEGIGQLFEKIKQESKAN
GHPNGDAGLFFTNLYVTPVLRNISLYLEKGQMLAVAGSTGSGKSSLLMMILGELVPSEGK
IRHSGRISFSPQTSWIMPGTIRDNILFGLTYDEYRYTSVIKACQLEEDFALLPEKDKTPL
IEGGVTLSGGQRARLCLARAVYKDADLYLLDAPFTHLDIVTEKEIFEKCICKLMASKTRI
VVTSKLDHLKRADKILLLHNGDCYFYGTFSELQAKRPDFSNLLLGLEAYDNINAERRGSI
LTETLRRVSIDETTSFRGPEPFRQSFRQPQPPVIGSQGHPGSDGYPEKRKQSLILNPLAA
ARKFSFIGNSQQTSNTSQSSTIEDGVHELSERKFSVVPEDEQVEEVLPRGNLYHHRLSHH
NGQRRQSVLAFITNAQGQERREQMQSSFRRKLSITPQYDLASELDIYARRLSRDSVYDIS
EEVDEEDMVECFADEHENVFETTSWSTYLRYVTTNRNLVYVLIFIVIVFAIEVAGSVIGI
FLITKEIWRDGANPSSPNYISEQHPNASSPPVHLAVIVTPTSAYYIIYIFMAHSDSILAL
GFFRGLPLVHTLLTVSKRLHEQMLSSVLRAPMAVLNTMKTGRIMNRFTKDMAIIDDMLPL
VLFDLVQLTLIVIGVIFTVSIMRPYIFIAAIPLAVIFVVLRKYFLRTGQQLKQLEAEARS
PIFSHLIMSLKGLWTIRAFGRQTYFETLFHKALNTHTAAWFHYLSALRWFLFRCDMIFVL
FFTAAAFIAVGSNQDKPGEIGIIVALAMLILGVFQWAIITSITVDGLMRSVDRVFKFIDL
PSEEPLPGKSGGKGGNDLVIDNPHAHDYWPNRGQMDVQGLTVKYTEAGRSVLSDISFSVE
GGQSVGLLGRTGSGKSTLLSALLRLASTDGEISIDGVSWSSVSLQTWRKAFGVVPQKVFI
LTGTFRMNLDPHGRYSDEELWRVAEEVGLKSVIEQFPDKLDFQLVDGGSVLSNGHKQLLC
LARSILSKARILLLDEPSAYLDPITLQVLRKTLKQSFFSCTVILSEHRVEPLLDCQRFLM
IEGNSIKSYDSIQRLLNETSQLKQAMSTTDRLRLFPTLHRLNSSKRAAPQTAKISSLLEE
AEDDVHDTRL
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcacctgtggaagatgcgaacttcgtctccaaatttttcttctggtggatg
acaccgctgctgaggaagggcttcaggaagaagttggagctgaccgatgtgtacaaggct
ccgtcgtttgatctggcggacaacctctctgagagactcgaaagagaatgggacagagag
gtggtgtcagccaagaagaagcccaagctgatgcgagcgctggcccgctgcttcttcggc
ccattcgccttctttggtgtcctcctgtatctcggggaggcgtccaagacggtgcagcct
cagatttcgggtcgaatcatcgcctccttcgacccgttccacgctccggagcggagccag
ggttactacctggccctgggcctctgcctcctcttcgtcgcccgctttctcctgctgcag
cccgccctgttcggcctgcatcacctgggcatgcagatccgcatcgccctcttcagtctc
atatacaagaagaccctgaagttatccagccgtgtcttggacaagatcagcaccggtcag
ctggtcagtctgatgtccgcccacctcaacaagctggatgagagcctgggtctggcccac
ttcgtatggatcacccccctgcagtgtatactgtgcacaggtctgatatgggaactgata
gaggtcaacggcttctgcgccctggcatctctgaccctgctgggcatcatccaggcctgg
ctctcacagaagatgggacctcaccgagcgaagcgagcggggatgatcagccgccgcctg
gctctcaccacggagattgtggagaacatccactctgtgaaggcgtacggctgggaggag
gtgatggagaccatcatcaagaacatcaggcaggacgagatgacgctgacgaggaagatc
ggttctctgcgttacttctacagcgcctcgtacttcttctccgccatcgtggtcatcatc
tcggccatcgtgcctcacgcgctcagcaaaggcatcatcctgcgtcggatcttcaccacg
gcctcctactgcatcgtcctgcggatgacgctgacccgccagctgccgggatccatccag
atgtggtacgacacgctggcgctggtggcgaagatcgaggacttcctgttgaaggaggag
tacagagtgctggagtacaacctcaccaccactgaactggagatggtcaacgtgtctgcg
tcctgggacgagggcattggtcagctgtttgagaagatcaagcaggagagcaaagcgaat
ggacacccgaacggagacgccggcctcttcttcaccaacctctacgtcacgcccgtcctc
aggaacatcagcctgtacctggagaagggccagatgctggcggtggctggatccaccggc
tcagggaagagctccctgctcatgatgatccttggtgagttggtgccatccgagggtaaa
atcagacacagcggtcgcatctccttctcgccgcagacgtcttggatcatgccggggacg
atccgcgacaacatcctgttcggcctgacgtacgacgagtaccgatacacctccgtcatc
aaggcctgtcagctggaagaggacttcgccctgctgcctgagaaagacaagacaccactc
atcgaaggcggggtaacgctcagcggcggtcaacgggctcgcctctgcctggccagagct
gtgtacaaagatgccgacctctacctgctcgatgcacctttcacccacctggacatcgtg
acagagaaagagatctttgagaagtgcatctgtaaacttatggcctccaagactcgcatt
gtggtcaccagcaagttggaccacctgaagcgagcagataaaatcctcctgctgcacaac
ggcgactgctacttctacggcaccttctccgaactgcaggccaagcgccccgacttcagc
aacctcctccttggcctcgaggcgtacgacaacatcaacgcggagcgacgcggctccatc
ctcacggagaccctgcgcagggtctccatcgacgaaaccaccagcttccgagggccggag
ccgtttcggcagtcatttcgccagccccaacctcccgtcattggatctcaaggccatcca
gggagcgacggctacccagaaaaacgcaaacagtctctcatccttaatcccctcgcggct
gcccgcaagttctccttcatcggcaactcccagcagacttcaaacacgtcccagtcctcg
acaatagaggacggggttcacgaactctcggagcgaaagttctccgtcgtacccgaggac
gagcaagtggaggaggtgctccccaggggcaacctttaccaccacaggctgtcgcaccac
aatggacagaggcgccagtccgtcctagccttcatcaccaatgctcagggccaagagcgg
agggagcagatgcagtcgtccttcaggaggaagctgtccatcacgccgcagtacgacctg
gcgtctgagctggacatttacgcccgccgcttgtccagggacagcgtttatgacattagt
gaggaagtggatgaagaggacatggtggaatgcttcgcagatgaacatgagaacgtcttt
gaaactacctcatggagcacctacctacgctacgtcaccaccaataggaacctagtctac
gtcctcattttcatcgtcattgtctttgctattgaggttgcaggttcagtcattgggatt
ttccttattactaaggagatctggagggacggcgccaacccgtcatcgcccaactacatc
agcgagcagcaccccaacgcctcgtcgccccccgtccacctggcggtcatcgtcacgccg
accagcgcttactacatcatctacatcttcatggctcattcggacagcatcctggccctg
gggttcttcaggggtctcccattggtgcacacgttgctcaccgtgtccaaaaggctgcac
gagcaaatgctcagctcggtgctgcgagctccgatggccgtgctgaacaccatgaagaca
ggtcggatcatgaacagattcaccaaagacatggccatcatagatgacatgctccctctg
gtgctgtttgacctcgtacagctgacgttgatcgtcatcggtgtcatcttcactgtgtcc
atcatgcggccgtacatcttcattgctgccatcccactggccgtcatctttgtggtcctc
aggaagtacttcttacgaactgggcagcaactcaaacaactggaggctgaagctcgaagc
cccatcttctcccacctcatcatgtcgctgaagggtttatggacaattcgggcgttcggg
cgtcagacctatttcgaaacgctcttccacaaggcgctgaacactcacaccgccgcctgg
ttccactacctgtcggcgctgcgatggttcctcttccgctgcgacatgatcttcgtcctg
ttcttcaccgctgccgccttcatcgccgtgggaagcaaccaggacaaaccaggggagatt
ggcatcattgtggccctggccatgctcatcctgggggttttccaatgggctatcatcacc
agcatcaccgtagacggactgatgcgttcagtggaccgtgtcttcaaattcatcgacctg
ccgtcggaggagccgctgccggggaaatctggcggcaaaggaggcaatgacctggtcatc
gacaacccccacgctcacgactactggcccaaccgaggccagatggacgtccagggcctc
acggtcaaatacacggaggctggacgctccgtcctcagcgacatctccttctctgtggag
ggggggcagagtgtgggtctgctgggtcggacgggctcagggaagagcaccctgctgtcc
gccctgctgcgcctcgcctccaccgatggagaaatctctatcgacggcgtctcctggagc
tccgtgtccctgcagacctggaggaaggccttcggagtggtgcctcagaaagtctttatt
ctgactgggactttccggatgaacctggacccacacggacgttacagcgatgaggagctg
tggagggtggctgaggaggtgggtctgaagtcggtgatcgaacagtttccggacaagctg
gactttcagctggtggacggaggcagcgtcttgagcaatggacacaaacagctgctgtgt
ctcgcacgctccatcctcagcaaggcccgcatcctgctgctggacgaaccctccgcctac
ctcgaccccataacgttgcaggtcctgaggaagacgctgaagcagtcgttcttcagctgc
accgtcatcctatcagagcacagggtggagccgctgctcgactgtcagaggttcctgatg
atcgagggcaactccattaaaagctacgactccatccagaggctcctgaatgagacgagt
caactgaaacaggccatgagcaccaccgaccggctccgcctcttcccgacgctccaccgc
ctcaactccagcaagagggcggcgccgcagaccgccaagatttcatcgctgctggaggag
gctgaggacgacgtccatgacacccgcctctga
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integrated database retrieval system
