Lates calcarifer (barramundi perch): 108893925
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Entry
108893925 CDS
T04895
Symbol
dscama
Name
(RefSeq) Down syndrome cell adhesion molecule a isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108893925 (dscama)
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
DSCAM family
108893925 (dscama)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
V-set_CD47
C1-set
C2-set_3
Ig_C17orf99
Interfer-bind
fn3_2
Psg1
Motif
Other DBs
NCBI-GeneID:
108893925
NCBI-ProteinID:
XP_018547914
UniProt:
A0AAJ7VDD9
LinkDB
All DBs
Position
LG20:6550517..6638958
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AA seq
2028 aa
AA seq
DB search
MWILALIFSQCILNVFCEDLRSSLYFVNASVQEVVFASTTGTSVPCPAAGVPPVSLRWYL
ATGEEIYDVPGIRHVHPNGTLQIFHIPPSSFSKLIHDNTYYCTAENPSGRIRSQDVHIKA
VLREPYTVRVEDQKAMRGNVAVFKCIIPASVEAYITVVSWEKDTMSINAEMSRFLITSTG
ALYILDVQMEDGLYNYRCMTRHRYTGETRQSNSARLIVSDPTNSAPHILDSFERREVMAS
HRVELPCKASGHPAPKYRWLKDNRPLEPDTRFRQSVTGLLIERSQPSDTGTYVCEVWNGY
GNAEVVGRLQVKEPLKVVVSPRKVKGSVGSQVSLSCSVTGSEEYQLSWYRNGELIYPSNS
VRMTGQNRENLVMAGMAKSDGGAYQCFARHGKMSAQDFVQVILEDGTPKILASFSEKVYN
INEFVSLSCTVKGTPEPRVTWTLDDEPVVRDSRHRISHYTNAEGHVVSHLNISQTQVPDG
GVYRCICNNSAGTVSYQARINVRGPASIRPMKNLTAIAGRDMYIHCRVIGYPYYSIKWYK
DSNLLPYNHRQRAFENNGTLKLFDVQKDVDEGEYTCNVLVQPQLSTHQSVYVTVKVPPTI
HPFEFPRFSIGQRVFIPCVVMSGDQPVFITWQKDGRPIPASLGVTIDNIDFTSSLRISNL
TLMHNGNYTCIARNQAAAVEHQSQLIVRVPPKFVVQPKDQDGIYGKAVILNCSAEGYPVP
TIQWEYSKGAGVPQFKPIALNSGFRIEVLVNGSLLIKHVLEEDSGFYLCRVSNDVGADVS
KSMYLNVKIPAMITSYPNTTLATQGEEKKMSCTAHGEKPIMVRWEKEERIINPETSRYVV
SVKEVGDEVISTLQIMPTVREDSGFFSCHAINSFGEDRGIIQLTVQEPPDPPEVEIREVK
DRTIALRWTMGFDGNSPITGFDIESKNKSASWDTAQKTKDVSPQLNQATIIDLHPSSTYN
IRMFAKNLIGKSEASNELTITTDEAAPDGPPQDVQLEALSSQSIRVTWRAPKKHLQNGAI
RGYQVGYREYSSGGNYQFSVISVETTGDNAESLVLDNLKKFTQYGVVVQASNSAGTGPSS
TEVAATTLEDVPSRPPENVQATATSPEVISLSWLTPPKDALNGNLLGFRVIYWANLPDGE
LGEIRNVTTSKPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIYTRTKEDVPGPPAGVK
AAAASNSVVFVSWLPPLKVNGIIKKYTVFCSNPHPTVSSEFEAAPDIFFYRIPNLSRNRQ
YNVWVVAVTAAGRGNTSEIITVKPMAEAPARILTFNRTVTTPWMRDIVLPCKAVGDPSPT
IKWLKEINGTPAPVVIDSRRSVHGNGSLVIRTVKAEDSGNYTCVASNSFGSDKIVLNLQV
QVPPDQPRLTVTKTTTTSITLSWIPGDNGGSSIRGYILQYSEDNSEQWGNFAISPSERSY
RLENLKCGTWYKFTLTAQNAVGPGRISEIIEAKTHGKEPQYSKEQELFTSINATRVKINL
NGWNNGGCPITSFTLEYRPVDSPTWTTAQRTSLTKSYILYDLQEATWYELQMKVYNSAGY
AEKRVKFATLSYDGSTIAPLVKAPNVSEDNSGGGEGLKMMVTISCVLVGIVVIFIGLLVL
RRRRREQRLKRLRDAKSLAEMLMSKNTRPAEPINKQQQTLRMHIDIPRAQLLIEERDTME
TVDDRSTVLLTDNDFGETQKQKSSTVTHTVHYQSLSQATGPLVDVSDARPGTSKSNPTAR
RTAKAGPAARNRYASQWTLNRPHPPVSSHTLSTDWRLPTPRVAGSVDKESDSYSVSPSQD
TDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQMTAGTND
YTDSLTSSTPSESGICRFTASPPKPQDVSRVMNMAVPKAHRPGGELVHLPPYLRMDFLLN
RGMSCSGSSRGTASGERAAMGQACLEPQKSRSLKRPSRMAPPTPTEAPQASRDPVAQWQP
GSAATLPHREGSELAQAAKLSTSQESLLDSRGHLKQSSNPYAKSYTLV
NT seq
6087 nt
NT seq
+upstream
nt +downstream
nt
atgtggatattggctcttatcttttcccagtgcatcttgaatgttttctgtgaagatcta
cgttccagcttatattttgtcaatgcatctgtgcaagaggtagtgtttgccagcaccaca
gggacatcggtgccctgtcccgccgcaggcgtgccccctgtctcactgcgctggtacctg
gccacaggcgaggagatctatgatgtgccagggatccgccatgtgcaccccaatggcacc
cttcagatcttccacatccccccttccagcttcagcaaactcatccatgacaacacctac
tattgcacagcggagaacccctcagggagaatcaggagccaagatgtccacattaaggct
gtcctacgagagccctacactgttcgggtggaggaccagaaagccatgagaggcaatgtg
gcggtcttcaagtgcattatccctgcctcagtggaggcctacatcactgttgtgtcctgg
gagaaagacacaatgtcaatcaacgctgaaatgtctcggtttctcatcacatccacggga
gccctgtatatcctggatgtgcaaatggaagacgggctgtacaactacaggtgtatgaca
cgccatcggtacacaggagagacccgacagagcaatagcgcccgcctcattgtctcagac
cccaccaactcagcaccccacatcctggacagctttgagcgtcgtgaggtgatggcgtca
catcgagtggagctgccctgcaaggcctccggtcatcctgcacccaaataccgctggcta
aaggacaaccggccgctggagcccgacacacgcttcagacagagtgtgacaggcctgctg
atagagagatcccagcccagtgacacggggacatatgtgtgtgaggtgtggaatggctat
ggcaatgctgaggtcgttggcaggctgcaggtgaaagagcccctgaaggtcgtggtgagt
ccgcggaaggtgaagggcagcgtgggaagccaggtatcactgtcctgcagcgtaactggc
tccgaggagtaccagttgtcctggtaccgcaacggagagctcatctatcccagtaacagc
gtccgcatgacaggccagaacagggagaacttggtcatggctggtatggccaagagcgat
ggaggagcctatcagtgttttgccagacatggcaagatgtcagcccaggacttcgttcaa
gtcatactggaagatggcacccccaagattctggcttcattcagcgagaaggtctacaac
atcaacgagtttgtgtcgctgtcgtgtacggtgaagggcacgccagagccacgggtaaca
tggaccctggacgatgagcccgtggtacgggacagccgccaccgcatctcccactacacc
aacgctgaaggtcacgtggtcagccacctcaacatcagccagacccaggtgcccgacgga
ggggtgtaccgctgcatctgcaacaactcggccgggacagtttcctaccaggcgcgaata
aacgtaagagggcctgccagcatcagaccaatgaaaaacctcactgccatcgctgggcgg
gacatgtacatccactgccgtgtcattggctacccatactactccatcaagtggtacaag
gactccaatttactgccgtacaaccaccggcagcgggccttcgagaacaacggcaccctg
aagctgtttgacgtgcagaaggatgtggatgaaggagaatatacatgtaatgtgctggtg
caacctcagctctccacacaccagagtgtctacgtcactgttaaagtcccacctaccatc
cacccatttgagttccctcggttttccattggccaacgagtcttcatcccctgtgtggtc
atgtctggcgaccagcccgtcttcatcacctggcagaaggacggtcggccaatcccagcc
agcctgggcgtcaccatagacaacatagacttcaccagctccctgcgcatctccaatctc
acgctgatgcacaacggcaactacacctgcatcgcgcgcaaccaggctgccgctgtggag
caccagagccagctcatcgtccgagttcctcccaaatttgtcgtgcaaccaaaggatcag
gatggcatctatggaaaggcggtgatactaaactgctcagcagaaggatatcctgttcct
accatccagtgggagtactctaaaggcgccggggtccctcaattcaaacccatcgccctc
aactcaggctttcggattgaggtgctggtcaatggctctctgctcattaagcatgtgctg
gaagaagacagtggtttctacctgtgtagagtcagcaatgatgtcggagctgatgtcagc
aagtccatgtatctcaatgtcaaaatcccagccatgatcacgtcttaccccaacaccaca
ttggccacgcagggtgaagagaagaagatgagctgcacagcacacggtgagaagcccatc
atggtgcgatgggagaaggaggaacgcatcatcaaccccgagaccagtcgctatgtggtt
tctgtcaaggaggtgggcgatgaagtcatctccaccctgcagatcatgcccacagtgagg
gaggactccggtttcttctcctgccacgccatcaactccttcggtgaagacagaggaatc
atacagctcacagtacaagagcccccagaccccccagaggtggagatcagagaagtgaag
gacaggaccattgccttgcgttggactatgggttttgatggcaacagtccaatcacaggc
tttgatattgagagcaagaacaaatcagcctcctgggatactgctcagaagaccaaagat
gtctcacctcagctcaaccaggccaccatcatcgacctgcacccctcctccacctacaac
atccgcatgtttgccaagaacctgatcggcaagagtgaggccagcaacgagctcaccatc
accactgatgaagcagctcctgatggaccacctcaggacgtgcagctggaagccctctcc
tctcagagcatccgagtcacttggagggcacctaagaagcacctccagaatggggccatc
cggggctaccaggtgggctacagagagtacagctcaggtggaaactaccagtttagtgtg
atcagtgtggaaaccacaggggacaatgcagagagcctggtgctggacaacctgaagaag
ttcactcagtatggagttgtggtgcaagccagcaacagcgctgggacagggccctcatcc
acagaggtggctgctaccacgctggaggatgtgcccagtcgtcctcctgagaatgtccag
gccacagcaacatctccagaggtcatctctctgtcctggctgaccccgcccaaagacgct
ctgaatggcaacctgctgggcttcagggtcatctactgggccaacctgcctgatggagag
ctcggagagatcaggaacgtgaccacctcgaagccctctctggagctggatggactagag
aagtacaccaactacagcatccaggtgttggccttcaccagagctggagatggcgttcgc
agcgaacagatttacactcgcaccaaggaggacgttccgggtcctccggcaggtgtgaag
gcagcagctgcatccaattcagtggtctttgtgtcctggcttcctcctctcaaagtgaac
ggcatcatcaagaaatacactgttttctgctccaaccctcaccccacggtgagcagtgag
tttgaggcagccccagacatattcttctaccgcatccccaacctgagcaggaaccggcag
tacaatgtctgggtggtggccgtcactgctgcaggccgtggaaacaccagtgaaatcatc
accgtcaaacccatggctgaggctccggctcggattctgaccttcaacaggacagtgacc
accccctggatgagggacattgtgttgccttgtaaagcagtgggtgatccatccccaacc
atcaagtggctgaaggagatcaatggtaccccagcacctgttgtgattgacagccggcgt
agtgtccacggtaacggcagccttgttatccgcacagtgaaagcagaggattctgggaac
tacacttgtgttgccagtaacagctttgggtctgacaagatcgtcctcaacctgcaggtt
caagttccacctgatcagcctcgtctcacagtgaccaagaccaccaccacctctataacc
ctctcctggatcccaggagacaacggaggcagctctataagaggctacattctgcagtac
tcagaggacaacagtgagcagtggggtaactttgccatcagtcccagtgagcgctcctat
cggctggagaacctcaagtgtggcacctggtacaagttcaccctcaccgcccagaatgca
gtggggccgggacgcatcagtgagatcattgaagcaaagactcatgggaaagaacctcag
tactctaaagaacaggagctcttcactagcatcaacgccactcgggtcaaaataaacctg
aacggctggaacaacggcggatgccccatcacctcatttacccttgagtatcggcctgta
gactcgcccacgtggaccacagcccagcgcacctcactcaccaagagctacatcctgtac
gacttgcaagaggccacctggtacgagctgcagatgaaggtctacaacagcgccggctac
gctgagaagagagtcaagtttgcaacactcagctacgatggcagtaccattgcacctttg
gtgaaggcacccaatgtcagtgaggataactcagggggcggtgagggtttgaagatgatg
gtgactatttcctgtgtgttggtgggcatcgttgtgatcttcatcgggttactggtgctg
aggaggaggaggagggagcagaggctcaagaggctacgagatgcaaaaagtttggctgag
atgctcatgagtaaaaacacacgtccagcagagccaattaacaaacagcaacagacgctc
cgcatgcacattgacatccccagagcccagcttctgatagaggagcgagacaccatggag
accgttgatgacaggtccactgtgctactgactgataacgacttcggggagacccagaaa
cagaagtcatccacagttacccacactgtccactaccagtccctgtcccaggcgactggt
ccactggtagatgtgtccgatgccagaccaggaaccagtaagtccaaccccacagcccgt
cgcacagccaaagccggcccagctgctcgcaaccgctacgccagccagtggaccctgaac
cgaccacacccccctgtctcctcccacaccctcagcactgactggaggctgcccacaccc
agagtcgcaggctcagttgacaaggagagtgacagctacagcgtcagcccatctcaggac
acagaccgagcacggagcagtatggtgtcaacagaaagcgcctcctccacctacgaggag
ctcgccagagcttacgagcacgccaagatggaggagcagctgcggcacgccaaattcacc
atcaccgaatgcttcatctctgacacgtcctcagaacagatgacggcaggcaccaacgac
tacaccgacagcctgacctccagcacaccgtccgaatcgggcatctgccgcttcactgct
tcccctcccaagcctcaggacgtcagccgggtcatgaacatggctgtgcccaaagcccac
agaccggggggcgagttggttcaccttcctccatacctgcgcatggacttcctgttgaac
cgaggcatgtcctgctcggggtcatccagggggacagctagtggggagagagctgccatg
ggtcaggcctgtctggagccccagaagagccgctcactgaagcggccttctcgcatggcg
cccccaacgcccacagaggcccctcaggccagcagggacccagtggcccagtggcaaccc
ggctctgcggccacgctcccccacagagagggctcagagctggcccaggccgccaagctc
agcacctcccaggagtccctgctggactcacgaggacatctcaaacagagcagcaacccc
tacgcaaagtcctacacgctggtataa
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