Lates calcarifer (barramundi perch): 108893926
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Entry
108893926 CDS
T04895
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03030
DNA replication
lcf03420
Nucleotide excision repair
lcf03430
Mismatch repair
lcf03440
Homologous recombination
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108893926
03420 Nucleotide excision repair
108893926
03430 Mismatch repair
108893926
03440 Homologous recombination
108893926
03460 Fanconi anemia pathway
108893926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108893926
03032 DNA replication proteins [BR:
lcf03032
]
108893926
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108893926
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108893926
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108893926
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108893926
MMR (mismatch excision repair)
108893926
DSBR (double strand breaks repair)
HR (homologous recombination)
108893926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
108893926
NCBI-ProteinID:
XP_018547917
UniProt:
A0AAJ7Q6C7
LinkDB
All DBs
Position
LG20:20791609..20827260
Genome browser
AA seq
670 aa
AA seq
DB search
MSATLTHGAIEALYKGSEVQNPVLQLLSMRTIPTASGPPRFRLMMSDGQHYLSSFLLATQ
LNDLVEENLLVPNCMCMLKKTVTNTLSDGRHVVVVMGMEILQSAEETGGKIGNPTPYNTD
DKTPQTSVSSSSVSGSPPSAAVPGPSYKNNSAAPSPPRGRGRGFVGKSPMKASSTTFSPM
KASPSKFSPMKPSPTTTSPSKFSPAKGSPSKFSPSKFSPMKFSPMKGSPMKATSSSPSSS
VIRIASLNPYQSKWTIRARVTNKSNIRTWSNSKGEGKLFSFDIVDESGEIKITAFNKEAD
KFFPLVEQGQVYYISKATLKVANKQYTTLKNDYEMTLHAHSSIVPCDDGQDIPTVHCDFV
PIAELENRDKDTIIDVIGVCKSAEDVSRITTKSSREVSKRALNLIDTTGKVVTVTLWGEE
AEKFDGSGQPVVAVKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDRTGYALHS
QSLTDTRSAGSGARMNWKTLSDVKTEHMGHGEKADYFSCVATVVYIRKENCLYQACPSAD
CNKKVIDQQNGLYRCEKCNREFPSFKYRLLLSANLADFGDNQWVTCFQETAEALLGHSAE
TLGQYRETDETAFDEVFQKANFTTHIFKNRVKLETYNDESRVKVTVMEVQPVDHREYSRR
LLSNIRKLAS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcaacactcacacatggggcgattgaagccctgtacaaaggctcagaggtgcaa
aatcccgtgctgcagctgctgagcatgcgtacaatccctactgcatcaggtccacccagg
ttccggcttatgatgagtgatggtcagcactatttgtcttccttcctcctggccacccag
ttaaatgatctggtagaagagaacctccttgtaccaaactgtatgtgtatgttgaagaag
actgtcaccaacacattgtcagatggcaggcatgtggtggttgtgatgggcatggagata
ttgcagtcagctgaggaaactggagggaagattggaaatcccactccatataatacagat
gataagactccacagacttcggtctcaagctcctctgtctcaggatctcctccatcagct
gcagtacctggaccctcctataagaacaacagcgcagccccttctcctccccgaggccgt
ggaagaggttttgtgggaaagtcacccatgaaggcttcatccacaacattttcacccatg
aaggcttcaccctcaaagttttcacccatgaagccttcacccacaacaacttcaccttca
aagttttcacctgcaaagggttcaccctcaaagttttcaccctcaaagttttcacccatg
aagttttcacccatgaagggttcacccatgaaggctaccagtagttctccaagttcttca
gtgattcgtattgccagcctcaacccctaccaaagcaagtggactatcagagcccgagtc
accaacaagtccaacatccgcacctggagtaactctaaaggagagggcaagctcttctcc
tttgacattgtggatgagagtggagaaatcaagatcacggccttcaacaaggaagcggac
aagtttttccctctagtggagcaaggccaggtgtactacatctccaaggcgacgctgaag
gtggccaacaaacagtacaccacactgaagaatgactatgagatgaccctccacgctcat
tcatccatcgtaccttgtgatgacggtcaggacatccccacagtccactgtgactttgtg
cctatcgcagagctggagaatagagacaaggacaccatcattgatgttattggagtgtgt
aagagtgcggaagatgtatcccgtatcaccactaagtccagcagagaagtctccaagagg
gccctcaacctaatagacacaaccggcaaagtggtgacagttacactgtggggagaagag
gcagagaagttcgacggctctgggcagcctgtggttgccgtcaaaggagctcgcttgtct
gattttgggggcagatcgctctctgctttgttcagctcaacagtcatggtcaacccagac
ataccggaggcctttagattgagggcttggtatgaccggacaggctatgcgctccacagc
caatccctgacagacacaaggtcagcaggcagcggagcaagaatgaactggaaaacactg
agcgatgttaagactgaacatatgggacacggagagaaggcagactatttcagctgcgtg
gcgacagtggtttacattcggaaggagaattgtctgtaccaggcctgtccatctgcagat
tgcaacaagaaggtcatagaccaacagaacgggctgtaccgctgcgaaaagtgtaacaga
gagttccccagctttaaatacagactcctactttctgccaacttagcagacttcggggat
aaccagtgggtgacatgcttccaggagacagcagaggccttgttaggtcacagtgcagaa
acactgggacagtacagagagaccgatgagactgcatttgacgaagtcttccagaaagct
aacttcacaacgcacatctttaaaaacagagtcaagctggaaacgtacaatgatgagagt
cgagtgaaggtaactgtaatggaagtccagccagtcgaccacagggagtacagcaggaga
ctcctcagtaacattcgcaaattggccagctga
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