Lates calcarifer (barramundi perch): 108894146
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Entry
108894146 CDS
T04895
Name
(RefSeq) transmembrane channel-like protein 3 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108894146
03037 Cilium and associated proteins [BR:
lcf03037
]
108894146
Transporters [BR:
lcf02000
]
Other transporters
Pores ion channels [TC:
1
]
108894146
Cilium and associated proteins [BR:
lcf03037
]
Other cilia and associated proteins
Stereociliary proteins
108894146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
HemY_N
Orf78
Motif
Other DBs
NCBI-GeneID:
108894146
NCBI-ProteinID:
XP_050932190
UniProt:
A0AAJ8DV32
LinkDB
All DBs
Position
LG2:complement(16257719..16282014)
Genome browser
AA seq
941 aa
AA seq
DB search
MSTASEPWVGSSRSLSAAKRHKSIRKNSRRIYSAYQDQQGSSDDEDKEDERVDSNDPEEM
FQNIQYQKEIIANIRTRPWPMRRKLKVLKQAREIVLKYEGRLTRTRGYQTAGADLLKKLS
RVLYNIVVLFIPWEVRIKKIESHFGSGVASYFIFLRWLFGINIVLTIMTGAFIVLPELLA
GAPFGTTRSKTIPKEHLASAQDLDTIWSLGGYLQYSVLFYGYYGRVRKIGSAGYRLPLAY
FLVGMAVFAYSFIILLRKMAKNSRLSLASASDENFTFCWRVFCAWDYLIGNPEAAESKGA
AIVNNIREAIVEEQEKKKDTSLAVLISLRILANILVLLSLAGSIYIIYFVVDRSQKLEQE
KPELTLWEKNEVSVVVSLITMIAPSAFELVAQLEMYHPRTSLRFQLARVLVLYLGNLYSL
IIALLDKVNSMSSAVPVSTGNWSDSSSFLATISQPEVNSFSTLVSKISVAEHHNSTIATI
ATVLEVTNSSSSSSRSSSATISNQTALFEKNTRSQQDQCWETYVGQEMLKLSIIDMIFTV
ASILLIDFIRGLVVRYLSDCCCWDLESKFPEYGEFKIAENVLHLIYNQGMIWMGAFFSPC
LPAFNVLKLIGLMYLRSWAVLTCNVPHQQVFRASRSNNFYLAMLLFMLFLCMLPTIFAIV
RYRPSQHCGPFSGQEKIYDIISETVASDFPLWFSKVMSYITSPVVVLPALLLLFMLIYYL
QAIARSLKFTNNQLRMQLQTERTEDKKKVFQMAAARLQTPEAVAADKKLDQQESDITSQE
ASVHTPSPRRNGSVTNFQSPVRRGNSIRTIAQSASRADLNRGSVAGICQESDSDHTAQTQ
AGAHTYQEDRTLLTSCRGRWVHRSAELRRTAWPHHPLCDRQRARAQEKAAALDHSDPTPL
PHGRARRDPGAVPAQHQALHPPCCSPPTASSPLPHITAASE
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagcgtctgagccctgggtcggcagcagcaggtctctgtctgcagccaagaga
cacaagagtatcaggaagaactccaggaggatttattcagcctatcaggaccagcagggc
tcctcagatgatgaagataaagaggatgagcgggtggacagcaacgaccctgaggaaatg
ttccagaacattcagtaccagaaggagatcatcgccaacattcggaccagaccctggccg
atgagacgcaagctcaaagttctgaagcaggccagagagattgttctgaagtatgagggt
cgactgacgagaaccagaggctatcagactgcaggagctgatctgctgaagaaactctca
cgtgtgctttacaacattgtggttctgttcattccctgggaagtgagaatcaagaaaatc
gaaagtcactttgggtcgggtgttgcatcctactttatcttcctgcgctggctgtttggg
atcaacatcgtcctcaccatcatgaccggagccttcattgtcctaccagagctgctggct
ggagctccgtttggaacaacaaggagtaaaactatccccaaggagcatctggcttcagcc
caggacctggacaccatctggtctcttgggggctacctgcagtactctgtgttattctat
ggttactatggcagggtgaggaaaattggcagtgctgggtaccggttgcctctcgcctac
ttcctggttgggatggctgtctttgcctacagtttcatcattctgttaagaaaaatggcc
aagaactctcgtctgagcctggccagtgcctctgatgagaacttcacattttgctggagg
gttttctgtgcctgggattacctcataggaaacccagaagctgcagagagcaagggagct
gccatcgtcaacaacatcagggaagccattgtcgaggagcaggaaaagaagaaggatacc
agtttggcggtcctgatcagtctgcgtatcttagccaacatcctggtgctgctgtctctg
gccggcagcatctacatcatctacttcgtggtggaccgttctcaaaaactggagcaggag
aagccagagttgacgctgtgggagaagaatgaggtgagtgtggtggtttctctcatcacc
atgatcgctccgtctgcctttgagctggtggctcagctggagatgtaccatccacgaacc
tcgctgcgattccagctggccagagtgcttgttttatacctggggaatctctacagcctc
attattgccctccttgataaggtcaacagtatgagttctgctgtcccagtgagtacaggt
aactggtctgactccagctcattcctggccaccatctctcagcctgaggtcaacagcttc
tccaccctggtgtctaagatctctgtcgctgaacatcacaacagcaccatagcaaccatc
gccacggtgctggaggtcaccaacagcagcagcagcagcagcaggagcagctcggcgacc
atctccaaccagacggctctgtttgagaagaacacccgctctcagcaggaccagtgctgg
gagacctacgtcggacaggagatgctgaagctgtccatcattgacatgatcttcacagtg
gccagtattctgctcattgacttcatcagaggtttggtggttcgctacctgagtgactgc
tgctgctgggatttagagagcaagtttcctgaatatggagaattcaaaatagctgagaat
gtcctgcatctgatttataaccaaggaatgatctggatgggagcgtttttctccccctgt
cttcctgccttcaatgtcttgaagctgattggtctgatgtatctgaggagctgggctgtc
ctcacctgtaatgtcccccatcagcaggtgttcagagcgtccagatcaaacaatttctac
ctggccatgctgctgttcatgctgtttctgtgcatgctgcccaccatctttgccatcgtt
agatacagaccatcacagcattgtggaccattcagtggtcaagagaagatttacgacatc
atctctgagaccgtggccagtgacttccccctgtggttcagtaaagtgatgagttacatc
accagccctgttgtcgtgctgccagcactgctgctgctgtttatgctgatatactacctc
caggccatcgccaggtccctcaaattcaccaacaaccagctgaggatgcagctgcagact
gagaggactgaggacaagaagaaagtcttccagatggctgcagcaagactacagactcca
gaggcggtggcggctgacaaaaagctggatcagcaggagagcgacatcaccagccaggag
gcctccgttcacactccatctccccgacggaacggcagcgtcacaaactttcagtctcct
gttcgtcgtggaaacagcatccgcaccatagcccagtcggcgtccagggcggacctgaac
agaggaagtgtggctgggatctgtcaggagtccgacagtgaccatactgcccaaacacag
gctggagcacatacctaccaggaagaccgtacgctccttacatcctgtcgaggccgctgg
gttcatcgcagcgcagagttacggaggacggcgtggccacaccacccgctatgtgatcgt
caacgagcacgagcccaggaaaaagctgctgcgctcgaccactcggatcccacgccatta
cctcatggaagagcccggagagatcctggagctgtacccgcgcaacatcaagcgctacat
cccccgtgctgctcaccaccaaccgcatcctcaccgctcccacacatcacagcagcatct
gagtga
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