Lates calcarifer (barramundi perch): 108894231
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Entry
108894231 CDS
T04895
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108894231
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
108894231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Katanin_con80
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_EML_2
EIF3I
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_RIG_1st
Beta-prop_IP5PC_F
RMC1_N
PROPPIN
Tricorn_2nd
Beta-prop_LRRK2
Beta-prop_IFT140_2nd
WDR54
Ge1_WD40
WD_LRWD1
VPS8_N
Beta-prop_IFT122_2nd
Beta-prop_ACSF4
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
108894231
NCBI-ProteinID:
XP_018548334
UniProt:
A0A4W6CTN2
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All DBs
Position
LG2:complement(14545425..14557193)
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AA seq
700 aa
AA seq
DB search
MAAASTTKISWRLQEFEAHSSSVSCLALGKSSGRLLATGGEDCRVNIWAVSKANCIMSLT
GHKNPVECVQFNMSEEQVVAGSQSGSIRVWDLEAAKILRTLMGHKANITSLGFHPFGDFL
ASSSMDTNIKLWDVRRKGYVFRYKGHTQAVRSLAFSPDGKWLASASDDCTVKLWDLTQGK
TITEFKSHTAAVNIVQFHPNEYLLASGSSDRTIKLWDLEKFTMIGSLEGDTTPVRCIFFS
PDGSCLYSGATDSLRVFGWEPDRCFDMVPVGWGKVSDLAVCNQQLIGVSHQLSSVSSYVV
DLKRVKKSGGAVIQGIIQDNQPLTEPKDPKGAALRRNYERPTTTCSSQRVKQRSDADRRS
PEGERRSPSEDEADEKVSSAEIHNAEDYKEIFQPKNAISRTPPRMSEPFPAPPEDETILA
IGRQLKDMVSPFPDKPQAPPLAASTPVQRVEPTVVSCAKRPAPSEVGPSSSNPPASRPPP
AQPPVTTAKSKPQPKIILSTRNEPIGLNVADFLPPSPNNRPGALSDEEALSQIKKGHDTM
CVMLSSRHKNLETVRAVWAREDIKSALDTAVSMNDLSIVVDILNIINLQPSLWKLDLCTT
ILPQIDKLLQSKYESYMQTGCTSLKLIMKHFWILISDTLKAAPSVGVDITREERHQKCRA
CCKQLKNLSNIVKNKAAQVGRHGSAFKELQLLMAPLDDSL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccagcaccactaagatctcatggcgactgcaggagttcgaggctcactcc
agcagtgtttcctgtttggccctggggaaaagctccggccgcctgctggccacaggaggg
gaggactgcagggtgaacatctgggctgtgagcaaggccaactgcatcatgagtctgact
ggtcacaagaacccagtggagtgtgtccagttcaacatgtcagaggaacaggtcgttgct
ggatcccagtctggatcaatacgagtctgggacctggaggctgccaagatcttgaggact
ctcatgggacacaaagccaacatcaccagtctgggcttccatccatttggagacttcctc
gcctccagctccatggacacaaacatcaagctgtgggacgtccggaggaaaggatacgtg
ttcaggtataagggtcacactcaggctgtgaggagtctggccttcagtccagatgggaag
tggctggcttcagccagtgacgactgcaccgtcaagctgtgggatctgactcaggggaag
acgatcacggagttcaaatctcacaccgcagccgtcaacatcgttcagttccaccccaac
gagtacctgctggcatcaggcagctccgacagaaccatcaaactgtgggatctggagaaa
tttacaatgatcggttcgttggagggagacacgactcctgtaaggtgtatattcttcagt
ccggacggcagctgtctgtacagcggtgctacagactctctgcgggtgtttggctgggag
cccgaccgctgcttcgacatggtgccagtgggctgggggaaagtctctgacctggccgtc
tgcaaccagcagctgattggcgtgtctcaccagctctccagcgtgtcgtcctacgtcgtg
gatctgaagcgggtgaagaagagcggcggcgctgtgatccagggaatcatccaggacaat
cagccgctcactgagccgaaagatcccaaaggagctgcgctgcgaaggaactatgagaga
ccaacgaccacctgcagctcacagagggtgaagcagaggtcggacgctgataggaggagc
cccgaaggtgagaggcggagccccagcgaggacgaggcggatgagaaagtgtcgtcagct
gagatccacaacgctgaggactacaaggagatttttcagcccaagaacgccatctctcgt
actcctcccaggatgtcagagcctttccctgctcctcctgaagacgagaccatcttagcg
attggccgtcagctgaaggacatggtatctccgtttcctgataagccgcaggctcctccg
ctggctgcctctactcctgtccagagggtggagcctacagtcgtctcctgtgcaaagcgc
cccgccccctcagaggtgggaccgtcgtcctccaacccccccgcctcccgcccccctcct
gctcagcctcccgtcaccacagccaagtctaaaccacaacctaaaatcatcctaagcacc
aggaatgaacccatcggactgaacgtggccgacttcctgcctccttcgcccaacaacaga
cctggagctctgagcgatgaggaggctttgtctcaaatcaagaagggtcacgacaccatg
tgtgtgatgctgagcagccgacacaagaacctggagacggtccgagccgtgtgggccaga
gaggacatcaagagcgctctggacacggccgtctccatgaatgacctgtctattgtcgtg
gacatcctcaacatcatcaacctccaaccgtctctatggaaactggatctttgtacgacg
attctccctcagattgacaaactgctgcagagtaaatatgagagctacatgcagaccggc
tgtacgtctctgaagctcatcatgaaacatttctggatattgatctcagacactctgaag
gcagcgccgtctgtcggagtcgacatcacacgagaggagagacaccagaagtgccgagcg
tgctgtaaacagctgaagaacctgagcaacatcgtgaagaacaaggcggcgcaggtcggt
cgtcatggcagcgccttcaaagagctgcagctgctcatggctccgctcgacgactcgctc
tga
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