Lates calcarifer (barramundi perch): 108894294
Help
Entry
108894294 CDS
T04895
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108894294
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108894294
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108894294
Nuclear receptors [BR:
lcf03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
108894294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
MIOS_a-sol
Motif
Other DBs
NCBI-GeneID:
108894294
NCBI-ProteinID:
XP_018548430
UniProt:
A0AAJ7VDR5
LinkDB
All DBs
Position
LG2:complement(14203688..14277454)
Genome browser
AA seq
557 aa
AA seq
DB search
MESSLQDTASDPGRSGSEPATPLTETPPSLETPRDGERLTPARRHSSSGSSSSGSSHSKG
LSAVKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCL
IDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQQQQQQGS
LLLSHPSLSSPSPVEAEPLSPHYSLSSSGLTELPDELGGYMEQDSPAGGSVSSKADSGGE
GGGGGGGAFYLDIQPSPDQSGLDINGIKPEPLCDYGSSNGFFPYCSFSNGDSPPTVSMAE
LGETKGSDHLVQIISKSHLETCQYLREELQQMSWQNFLQDEVERYQSKPREVMWQLCAVK
ITEAIQYVVEFAKRIDGFMDLCQNDQIVLLKAGSLEVVFVRMCRVFDSQNNTVYFDGKFA
GPDVFKALGCDDLITSVFDFAKSMCSLHLTEDELALFSAFVLLSADRSWLQEKLQVEKLQ
QKIQLALQHVLQKNQREDGVLNKLRCKVSALRSLCSRHTEKLSAFRAIYPDIVRTHFPPL
YKELFGADLELTLQAND
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtccctgcaggatacagcgagcgacccgggcaggagcggctctgagcccgct
acaccgctcacagagacgccgccgagcctggagactccacgcgacggagagcgcctgaca
ccggccaggagacacagcagctccggctccagctcctccggctccagccacagcaaaggt
ttgtcagcagtgaagaagacacacacatctcagattgaaatcatcccctgtaagatctgt
ggagacaaatcttcaggaatccactacggagtgatcacctgcgagggctgtaagggtttc
ttcagacgcagtcagcagagtaacgccgcctactcctgtcctcgccagaaaaactgtctg
atcgaccgaacgagcagaaaccgctgccagcactgccgtctgcagaaatgtctggctgtg
ggcatgtcccgagacgctgtgaagttcggtcgtatgtccaagaagcagcgggacagtttg
tacgctgaggtgcagaaacaccgtctccagcagcagcagcagcagcagcagcagggctcc
ctcctcctgtcccacccaagcctcagcagccccagcccggtcgaggccgagccgctgtcc
ccccactacagcctctcctcctccggcctcacagagctccctgatgaactgggaggctac
atggagcaggactcccctgcaggaggatcagtgtcatccaaggcggactctggaggagag
ggaggaggaggaggaggaggtgcattctacctagacatccagccgtctccggaccagtcc
ggactggatattaacggcatcaaaccggagccgctgtgtgactatggatccagtaacggc
ttcttcccatactgctccttcagcaacggagactcaccacccaccgtgtccatggccgaa
ctcggtgagacgaagggatcagatcatctggtccaaatcatctccaagtctcacctggag
acgtgtcagtacctgagggaggagctgcagcagatgagctggcagaacttcctgcaggac
gaggtggaacgctaccagagcaagcctcgggaggtgatgtggcagctctgtgccgtgaag
atcactgaggccatccagtacgtggtggagttcgccaaacgtatcgacggcttcatggat
ctctgccagaatgaccagatcgtgctgctgaaagctggttctctggaggtcgtctttgtt
agaatgtgtcgagtgtttgactcgcagaacaacaccgtttactttgacgggaaatttgca
ggtcctgatgtcttcaaagctctaggctgtgatgatttgatcacatcagtgtttgacttt
gctaagagcatgtgttcactgcacctgactgaggacgagctcgctctcttctcagcgttt
gttctgctctctgcagaccggtcatggctgcaggagaagttgcaggtggagaagctgcag
cagaagattcagctggctctgcagcacgtcctgcagaagaaccagagagaagacggagtc
ctcaacaagctcaggtgtaaggtatcagcgttgcgttcactatgcagtcgacacacagag
aaactgtcagccttcagagccatttaccccgacatcgttcggacgcacttccctcccctt
tacaaggagttgtttggtgccgacctcgaactgacactgcaggccaatgactaa
DBGET
integrated database retrieval system
