Lates calcarifer (barramundi perch): 108894383
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Entry
108894383 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108894383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108894383
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108894383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
108894383
NCBI-ProteinID:
XP_050932388
UniProt:
A0AAJ8BG30
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Position
LG16_LG22:5247951..5257116
Genome browser
AA seq
1388 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKPKPKPSPSPAEADLPSSVEKSNSSPKEQAKQIPPQQQPTK
TSKVKPKSNSNSAKGGLRKLFGDKALTTKESSSTCSFSAGALVWAKLEGHPWWPCMVVPQ
PLTGQQMRGRGRDQRIHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFSGKPVIR
RAMELADGVMFDSPEKRLKMPLCTDPSDAEDDDDDDDEEEEMEVDKSTLTDEELMDEDDR
KKEEAKPSKFSRRSARASTEKSSKAKRRRIIVASDSDDSGEEFKPEHAASSSEDEGEEEV
VSSEEESTEESEVESPVKPAKRKRPAEKSAKANVKVSTTPPAAPKRAPAAVAANTKSRLS
AFSAPDSFESQTNGSGTSGGATVWDHEKLEWLQDGRRKDSRRRRQIEDDYDPTTLYVPED
FLNRNTPGMRRWWQLKSEMFDAVIFYKVGKFYELYHMDAVTGVNELGLTFMKGTWAHSGF
PEIGFARFSDVLVQKGYKVARVEQTETPEMMEARCKTMAKPTKFDRVVRREVCRIITRGT
QTYSVLDGAPSESQSKYLLSLKEKAEEESSGRCRTYGVCFVDTSVGYFHVGQFPDDRHCS
RLRTLIAHFAPAEVLFEKGNPSVETRKILKASLSSALQEGLNSGTQFWDAQKTLKTFSEE
DYFKETAGKKQATGNNFLPPLLKKMTSESDSLCLTPKEGYELALSALGGCIFYLKKCLVD
QELLSMANFEEYIPVDVEMEKAAGPASFFAQTRQRMVLDGVTLANLEIFQNGSGGTEGTL
LERLDTCSTPFGKRLLKQWLCAPLCNPTSISDRLNAVEDLMGAQAEATEVSDLLKKLPDL
ERLLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISVLSSV
SSGFSSTFLCQIVQSERXEKDGLFPDLSAELRRWEKAFDHQKARTTGVITPKVGFDPEYD
QALTGIKNCERELQDYLDRQKKRLGCKSMAYWGTGRNRYQMEVPDSVSERNIPEEYEVKS
TKKGWKRYVTKESEQLFSELQGFEEKRDAALKDCMRRLFYNFDQNYADWKTGVECMAVLD
VLLALSRYSQGGDGPMTRPQVALPKDDDQVTPFIDLIGSRHPCVTKTFFGDDFIPNDIFI
GCPGSSETDEEKGHALCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDR
VFTRLGASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGKGTATYDGTAIASAVV
KELAEKICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITG
ACPKSYGFNAARLASLPEEVIQSGHRKAREFEKSTISLRLFKKLCQFAEDATLGNTHFTS
LVQMLNSV
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcactcttcaattttttcaccaagtctccgccgccggtgtcgaag
ccgaagccgaagcccagtccctctccggccgaggcggatctgccttcctccgtggagaag
tccaactcctctccgaaagagcaagctaaacagataccaccacaacaacaaccgaccaag
accagcaaagttaaaccaaaaagtaactccaactctgcgaaaggaggactcaggaaacta
tttggcgacaaggccttgacaaccaaagaaagcagctccacatgctcattcagtgccggt
gcccttgtgtgggcaaagttggagggacacccctggtggccgtgcatggtggtaccccaa
cctctgactggacagcagatgagaggccgtggtcgagaccaacgcatacatgtccatttc
tttgatgaacctcccactaggggatgggtcagcactaaatacatcagagagtaccaaggc
tctgacagcagtgatgctaaaaccggaggagtgttcttcagtggcaaacctgtaatccgt
cgtgcaatggagctggctgatggagtcatgtttgacagccctgaaaaaagattgaagatg
cctctctgcacagatccatcagatgcagaagatgatgatgatgatgatgatgaagaagaa
gaaatggaggttgacaagtcaacattgactgatgaagaactcatggatgaggatgaccgg
aaaaaggaggaagcgaagccatccaaattcagtcgccgttcagcccgtgcttcaacagaa
aagagcagcaaagccaaacgacggcgcattattgttgcctcagacagtgacgactcaggt
gaggaattcaaaccagagcatgctgcgtcgagcagtgaggatgaaggggaagaggaggtg
gtgagcagtgaggaggagagcacagaggagtcagaagtggaaagccctgtcaagcctgca
aagcgcaaacgtcctgcagaaaagtctgctaaagcaaatgtgaaagtatccaccaccccg
ccggctgcacctaaacgcgctccagcagctgtcgcagccaacacaaagtctcgcttgtcg
gccttctctgcccctgacagctttgagagccagacaaacggttcaggcaccagtggaggt
gcaacagtttgggaccatgagaagctggagtggttgcaggatggcaggaggaaagacagc
cgaaggcggcgacagatagaggatgactatgatcccaccaccctgtatgtgcctgaagac
ttcctgaacagaaacactcctggtatgcgtcggtggtggcagctcaaatctgagatgttt
gacgcagtgatcttctacaaggtagggaagttttatgagctctaccacatggatgctgtg
actggagtcaacgagctgggactgactttcatgaaagggacctgggcgcactcaggcttt
ccagaaattggctttgcacgtttctcagatgtattggtccagaaaggctacaaggtggct
cgtgtggagcagacagagaccccagaaatgatggaagcacgctgtaaaaccatggctaag
cccacaaaatttgaccgtgtggtgagaagagaggtgtgtcggattatcacacgtggtact
caaacctacagtgttttggatggtgctccatcagagagtcagagcaagtatctgctgagt
ttaaaggaaaaagctgaagaggaaagctccggtcgctgccgcacctacggagtgtgcttt
gtagacacctctgtgggttatttccatgtaggtcagttcccagacgatcgtcactgctca
cgtctgcgcaccctgatagcacactttgcccctgcagaagtgctttttgaaaaggggaac
ccatctgttgaaacacgcaaaatactcaaggcctctctgtcctctgctctgcaggaagga
cttaattcaggaacgcagttctgggatgcacagaagactcttaaaactttctcagaggaa
gactactttaaagagactgctggcaagaagcaggcaactggaaacaattttcttcctcct
cttctaaaaaagatgacctccgagagtgattcactgtgccttactcctaaggagggctat
gagctggcactgtcagcactgggtggatgcattttctacctgaagaaatgtctggtagac
caggagctgctctctatggccaactttgaagaatatatccccgttgatgttgagatggag
aaagctgctggacctgccagtttctttgcccagactcgtcagcgaatggtccttgatgga
gtgaccctggcaaacttggagatctttcagaatgggtcaggaggaacagaggggacactg
ctggagcgtttagatacatgctctaccccatttggcaagaggctgctgaagcagtggctc
tgtgctcctctgtgtaaccccacatccatcagcgacagactgaatgcagtggaggacctg
atgggagctcaggcagaggctactgaggtgtcagacctgctgaagaagctcccagattta
gagcgtctcctcagtaaaatccacagcataggcactcctctgaagggccaggaccaccct
gacagcagagcagttctctacgaagaggtcacctacagcaagcgcaagatagcagacttc
ctctcagcactggaaggtttcaaaactatgcaggagataatctctgtcctctcctcagtt
tcatctgggttttcctccacgtttctctgccaaattgttcagtctgaaaggnntgaaaag
gatggcctcttccccgacctctctgctgaactcaggcgctgggagaaagcttttgaccac
cagaaagctcgcactactggtgtcataaccccaaaagttgggtttgaccctgagtatgac
caggctctgactgggatcaagaactgtgaacgagagctgcaggattacctggatagacag
aagaagcgactcggttgtaaaagcatggcctactggggaactgggcgaaaccgctaccag
atggaggtgcctgacagcgtctcagagaggaatattcctgaagagtatgaggtgaaatct
acaaagaaaggctggaagcgttacgtcacaaaggaatcagaacagctgttttcagagctg
caaggatttgaggagaagagagatgctgccctgaaagactgcatgaggaggctcttctat
aactttgaccagaactacgcagactggaagactggtgtggagtgcatggcagtgcttgat
gtattgctggccttgtcacgctacagtcagggtggtgatggaccgatgaccaggccacag
gtggcactcccaaaggatgatgaccaggtaacgcccttcattgacctcattggatcccga
cacccctgtgtcaccaagaccttttttggtgatgacttcattcctaatgacatcttcatt
ggctgccctgggagcagtgaaacggatgaggagaaaggacacgccttgtgtgtccttgtc
acggggccaaacatgggtggaaagtccactctcatgagacagtgtgggcttgtgatcatc
ttagctcagctgggttgctatgttcctgctgagagcctgcgcttcacaccagttgacagg
gtcttcacccggctgggagcctcagatcgcatcatggctggagagagtaccttctttgtg
gaactaagcgagactgccagcatcctgcaccatgctactaaacactcacttgtgctcctg
gatgaattaggcaagggcacagccacatatgatggcacagcgattgccagtgctgttgtg
aaggagcttgctgagaagatctgctgtcgcaccctcttctccacacattaccactccctg
gtggaggactacgccaacaaccctgctgtgcggttgggccacatggcgtgcatggtggag
aatgaatgtgaggatccaagtcaagaaaccatcacattcctctacaagttcatcactggt
gcttgtccaaagagttacggcttcaatgccgctcgacttgccagcctgccagaggaggtt
atccagtcaggacacaggaaggccagagagtttgagaagagcaccatcagcctcagactg
ttcaagaagctctgccagtttgctgaagatgctacactgggcaacacacacttcacttca
cttgttcaaatgctcaacagtgtgtag
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