Lates calcarifer (barramundi perch): 108894983
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Entry
108894983 CDS
T04895
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108894983 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108894983 (sox17)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108894983 (sox17)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
108894983
NCBI-ProteinID:
XP_018549151
UniProt:
A0A4W6CLT0
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Position
LG24:14534954..14537103
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AA seq
400 aa
AA seq
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MSSPDAGYASDDQTQARCTMSVMMPGMGHCQWADPLSPLGDAKVKNEPCASGSGGQNRGK
NEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQAQSMPGDGRVCVEGLGLGY
HEHGFQLPPQPLSHYRDAQALGGPSYETYSLPTPDTSPLDAVESDSMFFPPHSQEDCHMM
PAYAYHPQAAEYQPQDPHSNHHSNPILHRHTASAPEQPPQPAALPPSYMGCPNPLAMYYT
QHCSPGHPKRHPGGAGQLSPPPDSHPHSADSMEQMHHSELLAEVDRSEFEQYLSSSSARA
DMTGLPYGPHEAGMQGPESLISSVLSDASTAVYYCSYNNS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcgggttacgccagcgacgatcagacccaggcaaggtgtacgatg
tcagtcatgatgcctggaatgggacactgccagtgggccgaccctctcagtcctctcggg
gacgccaaagtgaagaacgagccgtgcgcgtccggctccggtggacagaatcgcgggaag
aacgaaccgcggatccgacggcccatgaacgcgttcatggtctgggcgaaggatgagcgc
aagagactggcgcagcaaaaccccgacctgcataacgccgagctgagcaaaatgctgggg
aaatcatggaaagcccttcctgtcacagaaaagcagccctttgtggaggaggccgagcgg
ctgcgggttcagcacatgcaggatcaccccaactacaagtacaggccccggcggcggaag
caggtgaagaggattaagaggctggactctggctttctggtccacggcgtgtctgatcac
caggcccagtccatgccgggagacggcagggtgtgcgtggagggcctgggcctgggctac
cacgagcacggcttccagcttcctccacagccgctgagtcactaccgggatgctcaggct
cttgggggcccctcttatgagacctacagtctccccacacctgacacgtctcctctggac
gcagtggagtcagactccatgttcttccctccacactcacaagaggactgccacatgatg
cctgcgtacgcgtaccacccccaggcggcagagtaccagccccaggacccccactccaac
caccacagcaaccccatcctgcaccgacacactgcctctgctccagagcagcccccccag
cccgctgccctccccccttcctacatgggatgccctaaccccttggccatgtattacacc
cagcactgcagtccaggccacccgaaacgacacccgggaggggcgggacagctctccccg
cctcctgactctcaccctcactccgcagacagcatggagcagatgcaccactctgagctg
ttggccgaggtggaccgcagtgagtttgagcagtatttgagttcctcttctgcgcgtgcg
gacatgacaggcttgccctacgggccacacgaggctggcatgcaaggacctgaaagcctc
atatcatcggtgctgtcagacgccagcacagctgtgtattactgtagctacaacaactcc
taa
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