Lates calcarifer (barramundi perch): 108895002
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Entry
108895002 CDS
T04895
Symbol
myom1b
Name
(RefSeq) LOW QUALITY PROTEIN: M-protein, striated muscle
KO
K24495
myomesin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108895002 (myom1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108895002 (myom1b)
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
108895002 (myom1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
fn3
Ig_3
Ig_2
Ig_DSCAM-DSCAML_C
ig
V-set
Pur_ac_phosph_N
Ig_J_second
Ig_CD22
C2-set_3
AAA_31
baeRF_family7
Motif
Other DBs
NCBI-GeneID:
108895002
NCBI-ProteinID:
XP_050922868
UniProt:
A0AAJ8B062
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All DBs
Position
LG24:complement(14411130..14432982)
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AA seq
1468 aa
AA seq
DB search
MPGSIPFYQKHHRHYDRGYRSKETESKISQYQSSSSRYVAGSSSTSATSRSRGLRVSSHS
GLEESRLSPVPKRAKPTYLAVDKENQIIGYVVPIFRGSQEFATGFSDTEQARVRDTAAYM
ARRDLFTTGLEMERSEQFSRKEAMRESAERISLNKRIHEHEEHFKRMNEDSLMHAPEFVI
KPRSHTVWEKQCVRLHCTVSGWPDPRVIWYKNNVAIDPLANPGKYKLESRYSVHSLEINR
CDFDDTAQYRVSAMNSKGELSAFASVVVKRFKGEVDESLPEPRHGPVSEYGINFQTHIVD
KFGVSFGREGETMSLGCTVIIYPALHRYQPEVQWYRDDVLLSPSKWYHMHWSGDRATLTL
THLNKEDEGLYTLRVTTKSGYETYSAYVFVRDADAEVEGAPGAPLDVRCLDANKDYIIVT
WKQPAVDGGNSILGYFVDRCEVGTTHWIQCNDTPVKFARFPVTGLVEGRSYIFRVRAVNK
SGMSRPSRVSEPVAAMDPADRARMRGTSAPWTGQIIVTEEEPAEGIVPGRPLELQVTEAT
KNYVVLSWKPPGEKGLEGVMYYVEKCVAGTDSWQRVNTEIPVKSPRFALFDLAEGKSYSF
RVRCCNSAGVGEPSDPTEATTVGDKLDIPSAPGKVVPTRNTDTSVVVSWEASRDVKELIG
YYIEGSIVGSNVWEPCNNKPVNGTRFICHGLMTGEKYVFRVRAVNAAGLSQFSAESEPVE
VKAAIASPAPPYGITILECVRDSMVLAWKQPTFIGGADITGYFVDYREVIDGVPGKWHEA
NIKAVSERAYRVSDLKENRKYQFQVRAANMAGVGIPSLPSDTFLCEEWTIAVPGPPHDLQ
IREVRSDSLMLLWKPPVYQGRDPVNGFYIDIKEADAPEEAWRGVNNKATEKAYMKIKNLM
EGETYVFRVRAQNKAGVGKTSDVTEPVPALTKPGTKEIVVDVDDDGVVSLNFECCDLTPD
SKFVWSKNYEEITDTSHLSIETKGNKSKAVFSALGEDDIGIYSCIVTHTDGASAGYDLSA
EELKKLLEISHNHKFPIIPLKSELAVELMEKGRVRFWLQAEKISANGKVDYVFNDNVLSQ
GEKYKMNFDKNTGVIEMIMESLTPADEGTFTFQLQDGKATNQSSLVLIGDVFKELQKESE
FQKKEFLRKQGPHFIEYLSYEVTPECCVILKCKVGNIKKETSALWYKDGREIKADEHLGF
TEGVLKLEIAQISKKDSGVYEVVLKDDRGKDTSKLNLTDQGFKDLMNEVFSFIANSSTPL
KITSTDQGIRLYTFVSYYNDLLQVTWHYKDSAIAFSDRIKSGVVGEQLWLQITEPTEKDM
GKYAIEFNDGKGGLRRTVELCGQAFDDAFAEFQRLKAAAVAERNRARVAGGLPDVVTIQE
GKALNLTCNISGDPVPEVTWLKNDREITSDNHCILKFESGKFASFHITDVNTSDSGKYSI
LVKNKYGTESGDFTVSVFIPEEAGGKKK
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatctataccgttctaccagaagcaccaccgccactacgaccgaggctaccgt
agcaaggagacggagtctaaaatcagccagtaccagtccagcagcagcagatacgttgct
ggtagcagcagcacctccgccaccagcaggagcagaggacttcgagtgtcttcacactct
gggttggaagagagcagactgagccctgtacccaagagagccaagccaacttacttggct
gtggataaagagaaccaaatcatcggctatgtagtgcctatcttcaggggcagtcaagag
tttgctacaggattttcggatacagaacaagcaagggtgagggacactgctgcatacatg
gcccgcagggatttgttcaccactggtctggagatggagaggtcagagcagttctccagg
aaggaggccatgcgcgagtcagctgaacgcatctctctgaacaaaaggatccatgaacac
gaggaacacttcaagcgcatgaacgaagacagcctgatgcacgccccggagtttgtgatt
aaacctcgctcccacactgtgtgggagaagcagtgtgtgcggctgcattgcactgtcagt
ggctggcctgacccacgggtcatctggtacaaaaacaatgtggcaattgacccccttgcc
aaccctggcaagtataaacttgagagcagatacagcgtgcactcactggagattaacaga
tgtgattttgatgacacggcgcagtatcgcgtctctgccatgaactccaagggagagctg
tctgcttttgcctccgtcgtcgtcaagaggttcaaaggtgaagttgatgagtccctgcca
gaacccagacatggcccagtgtctgagtatggcatcaacttccagactcacattgttgat
aagtttggcgtgtcatttggaagagagggggagaccatgagtctaggttgtacggtcatc
atctaccctgccctgcaccgctaccagccagaggtccagtggtacagagatgatgttctc
ctgtctccatctaaatggtaccacatgcactggagcggagaccgagccacgctgacactc
acacacctcaacaaagaggacgagggtctctacaccctgcgcgtcaccaccaagtctgga
tatgaaacctactcggcctatgtctttgtcagagatgctgatgctgaggttgaaggagct
ccaggtgcccctctggatgttcgctgtctggatgccaacaaggactacattattgtcact
tggaagcagccagctgttgatggtggcaactctatcctgggctactttgtggacaggtgt
gaggttggaaccacccactggatccagtgcaatgacactccagtcaagtttgcccgtttc
cctgtgactggcttggtggaaggccgctcttatatcttccgtgtgcgtgctgtcaacaag
agtggcatgagccgcccgtccagagtgtctgaacccgtggctgcgatggacccagctgac
cgcgcccgcatgagaggtacttctgcgccctggactggccaaatcattgtcacagaggag
gagcctgcagagggcattgttcctggcagacctcttgaacttcaggtgacagaggccacc
aagaactatgtggtgctgagctggaagccacctggagagaaaggcctggagggtgtcatg
tactatgtggaaaagtgtgtcgcgggcacagacagctggcagagggtgaacacagagatc
ccagtcaagtctcctcgctttgcactgtttgatctcgctgaggggaagtcttacagcttc
cgtgtccgctgctgcaactctgccggcgtcggtgaaccctctgacccgactgaggccacc
acagtcggcgacaagcttgatatcccatctgccccgggaaaggttgttcccactagaaac
acagacacatcagttgttgtgtcctgggaagcttcccgtgatgttaaagagttgattgga
tactacatcgaggggagtattgtgggcagcaacgtgtgggagccgtgcaacaacaagcct
gtaaatggtaccaggttcatctgccacggcctgatgacaggagagaagtacgtgttcagg
gtgagggcagtgaacgcagcagggctcagccaattctccgcggagtctgagcctgtggag
gtgaaggctgctattgcctctcctgctccaccctatggcatcaccatcctggagtgcgtt
cgcgactccatggtgctggcctggaaacagccgaccttcattggcggcgctgacatcact
ggctactttgtggattaccgtgaggtcattgatggcgtgccggggaaatggcacgaggcc
aacatcaaggctgtcagtgagagagcctacagagtgtctgacctgaaggagaacaggaag
taccagttccaggtgcgagcagccaacatggcaggtgttggcatcccatcactgcccagt
gacaccttcctgtgtgaggagtggaccatcgctgtgccaggacctcctcatgacctgcag
ataagagaggtgcgaagtgactctctgatgttgctatggaaaccgcctgtataccagggc
cgcgacccagtcaatgggttctacattgacatcaaggaagcggatgcgccggaggaggcg
tggagaggagtcaacaacaaagccacagagaaggcgtacatgaagattaagaacctgatg
gaaggagagacgtatgtgttccgcgttcgtgctcagaataaagccggtgttgggaaaacc
tcagatgtgacagagccagtcccagctctgaccaaaccaggcaccaaggagatcgtggtg
gatgttgatgatgatggtgttgtctccctgaactttgaatgctgtgacctgacccctgac
tccaaatttgtgtggtccaagaattatgaggaaatcacagacacctcccacttgagtata
gagaccaagggaaacaagtccaaagctgttttcagcgctcttggggaggatgacattggc
atttactcctgtattgtcacccacactgatggtgcttcagccggctacgacctctctgca
gaagagttgaagaagctgctggaaatcagtcacaaccacaaattccccattattcccctg
aagtcagagttggctgttgagctgatggagaagggcagagttcgcttttggctgcaggcg
gagaagatttcagcaaatggcaaagttgattacgtgttcaatgataatgttctctctcag
ggggagaaatataagatgaactttgacaagaacactggtgtgattgagatgatcatggag
tctctgaccccggcagatgagggcaccttcaccttccagctgcaggatgggaaagcaacc
aaccagtccagcttggtactgataggagatgtattcaaggagctgcagaaggaatcagag
ttccagaagaaagagtttctcagaaagcaaggtcctcactttatcgagtatttgagttac
gaggtgactccagagtgctgtgttatactgaaatgcaaggttggcaacataaagaaggaa
acctctgcgctgtggtacaaagatggacgtgagatcaaagcagacgagcacctgggcttc
accgagggcgtgctgaaactggaaatagctcagatttccaagaaggactctggtgtgtat
gaggttgttctgaaggatgacagaggaaaggacacttccaaattgaatctgacagaccaa
ggattcaaggatttgatgaatgaagttttcagttttatcgccaattcctccactccactg
aagatcacaagcacagatcagggcatccgactctacacctttgtcagctactacaacgat
ttactccaagtaacatggcactacaaagattcagccatcgccttctctgaccgtataaag
agcggtgtggtgggagagcagctgtggctgcagatcacagagcccacagagaaagacatg
ggcaaatatgccatcgagttcaatgacggaaagggcggcctgaggagaactgtggagctg
tgtggtcaagcatttgatgatgcttttgcagaatttcagagactcaaagctgctgctgtt
gcagagagaaaccgtgctcgagtggcaggaggcctgcctgacgtggtcaccatccaggag
ggcaaggccctcaatctcacctgcaacatttcgggcgaccccgtgccagaggtcacctgg
ctgaagaacgacagggagatcacgtccgacaaccactgcatcctgaagtttgagtcaggc
aagttcgccagcttccacatcaccgacgtgaacacatcggactctggcaaatacagcatc
ctggtgaagaacaagtacggcacagagagcggagacttcaccgtaagtgtcttcatccct
gaagaggcgggcggcaagaaaaaataa
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