Lates calcarifer (barramundi perch): 108895022
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Entry
108895022 CDS
T04895
Symbol
si:dkey-37o8.1
Name
(RefSeq) LOW QUALITY PROTEIN: elongation factor 1-alpha-like
KO
K03231
elongation factor 1-alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108895022 (si:dkey-37o8.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108895022 (si:dkey-37o8.1)
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108895022 (si:dkey-37o8.1)
03012 Translation factors [BR:
lcf03012
]
108895022 (si:dkey-37o8.1)
04131 Membrane trafficking [BR:
lcf04131
]
108895022 (si:dkey-37o8.1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108895022 (si:dkey-37o8.1)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108895022 (si:dkey-37o8.1)
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
108895022 (si:dkey-37o8.1)
Translation factors [BR:
lcf03012
]
Eukaryotic type
Elongation factors
108895022 (si:dkey-37o8.1)
Membrane trafficking [BR:
lcf04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
108895022 (si:dkey-37o8.1)
Exosome [BR:
lcf04147
]
Exosomal proteins
Proteins found in most exosomes
108895022 (si:dkey-37o8.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Ras
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
108895022
NCBI-ProteinID:
XP_018549194
UniProt:
A0AAJ7Q7W1
LinkDB
All DBs
Position
LG24:14838616..14840890
Genome browser
AA seq
457 aa
AA seq
DB search
MAKEKTHVNVVVIGHVDSGKSTTTGHLVYKCGGIDQRRLEKFEKAAAQMGKSSFKFAWVL
DKLKAERERGITIDISLLKFNTQKYTMTIIDAPGHRDFIKNMITGTSQADVALLVVSAAK
GEFEAGVSRSGQTREHALLAYTLGVKQIIVCVNKMDLTEPPYSQRRFDEVVRGVSGFLKK
IGYDPTTVPFVPISGWTGENMITATQKMPWFQGWKVRRREGNASGRTLLEVLDSIQPPVR
TINKPLRLPLQDVYKIGGVGTVPVGKIETGVLKPGMTLMFSPAKLTAEVKSIEMHHQGLQ
TALPGHNVGFNIKNVAVKNLRRGDVAGNAQQDPPSDVRSFEAQVIILNHPGKVKAGYSPV
LDCHTAHVTCRFAELREKLDRRTGKKLEDQPQILISGDAATVKLVPIKPMCVESFFTYPP
LGRFAARDLKQTVAVGVIKSVEKDQSSKLPHKVQVCK
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagagaagactcacgttaatgtggtggttatcggccacgttgatagtggcaag
tccaccaccaccggacacctcgtctacaagtgtggtggcattgaccagaggagactggag
aagtttgagaaagctgctgcacagatggggaagagttccttcaagtttgcctgggtgttg
gacaagctgaaggctgagagggagcgaggaatcactattgatatttcactgctaaaattc
aacacacagaagtacaccatgacaataattgatgccccaggccatcgtgacttcatcaaa
aacatgataacagggacatcacaggctgatgttgccctcctggtggtctcagcagctaaa
ggggagtttgaggctggtgtgtcgagaagcggtcagaccagagagcatgccttgctggct
tacactctgggcgtcaagcagatcatagtctgtgtgaacaagatggacctgaccgaaccc
ccttacagccagagacgtttcgatgaagtggtgcgaggcgtgagcggcttcctcaagaag
atcggctacgaccccacgaccgtgccttttgttcccatctctggctggactggggagaac
atgatcactgcaacccagaagatgccctggttccaaggttggaaggtcagacgaagggaa
gggaatgcaagtggaagaactctactagaagttctggactccattcagccgcctgtgcgc
acaatcaacaagcctctacgattacctctgcaggatgtctacaaaattggaggagttggg
actgtgccagtgggcaagattgaaactggcgtcctcaaaccaggcatgaccttgatgttc
tcccctgccaagctcacagctgaggtcaagtcaattgagatgcaccaccagggcctgcag
acggctctaccgggacacaacgttggcttcaacatcaagaacgtggctgtcaagaacctg
cggcgtggggacgtggctggcaacgcccagcaggaccctccgtcagatgtccgcagcttt
gaagctcaggtgattatcctgaaccacccggggaaggtcaaagctggctactctcccgtc
ctggactgccacactgcccacgtgacctgtcgcttcgccgagctgagggagaagcttgac
cgtcgcacaggcaagaaactggaggaccagcctcagatactgatatctggagacgctgcc
acagtcaaactggttcccatcaagcccatgtgtgtggagagcttcttcacataccctcct
ttaggtcgctttgcagccagagacctaaagcagacagtcgctgtaggagtcatcaagtct
gtggagaaggaccaaagctcaaaactaccacacaaagtccaagtgtgtaaataa
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