Lates calcarifer (barramundi perch): 108895029
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Entry
108895029 CDS
T04895
Symbol
smarcd3b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X5
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108895029 (smarcd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108895029 (smarcd3b)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108895029 (smarcd3b)
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108895029 (smarcd3b)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108895029 (smarcd3b)
PBAF complex
108895029 (smarcd3b)
GBAF(ncBAF) complex
108895029 (smarcd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
TFIIA
Ribosomal_uS5m_N
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
108895029
NCBI-ProteinID:
XP_018549207
UniProt:
A0A4W6D0L5
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Position
LG24:14910055..14947471
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AA seq
517 aa
AA seq
DB search
MATEETAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGSPAVRPGL
PSPVMEPSRKRPAPSQQVQQQQQQQQQQQQQQAVQNRARKKPVGFPGANEMPARQMDMRE
PQSDPTLGSNAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEAL
KRPMKQQKRKLRLYISNTFNPARPDADDSDGSIASWELRVEGKLLDDPGKQKKKFSSFFK
SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLD
PRLARLLGIHTQTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIP
QRLTNLLLPPDPIVINHVISVDPNDQKKTACYDIDVEVEDPLKSQMSSFLLSTANQQEIA
SLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERR
AAFYHEPWSQEAVSRYFYCKIQQRRQELEQALAVRNT
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggctacggaggagacggcggggggagccaggaaagccaccaagagcaaactgtttgag
ttcctggtccatggagtgcgtcctggcatgccgtctggagcgaggatgccccaccaggga
gctcccatgggcccccccggcccaccgtatggagggagcccggcggtgcggcccggcctg
ccctccccggtgatggaacccagtcgcaagaggcctgccccctcccagcaggtccagcag
cagcagcagcagcaacagcagcagcagcaacaacaggccgtccagaaccgggccagaaag
aagccagtcggattccccggagccaatgagatgccggcgaggcagatggacatgagagag
ccccaatcagatcccacgcttggatcaaatgctaagagaaggaaaatggcagacaagatt
cttccgcaaaggattcgcgagctggtccctgagtctcaggcctacatggatctgctggcg
tttgagcgtaaactggaccagaccatcatgcgcaaacgtgtggacatccaggaagcactg
aagagaccaatgaagcagcaaaagcgtaaactgaggctttacatatccaacaccttcaac
cctgccagacctgatgctgatgactctgacggcagcattgcatcgtgggagctgcgagta
gaggggaagctgctggatgatccggggaagcagaagaagaagttctcttcgttttttaag
agcctggtgatcgagctggacaaagacctgtacggtcctgacaaccacctggtcgagtgg
caccgcacgcccaccacccaggagacggacggcttccaggtgaagaggccgggagacgtg
agcgtgcgctgcaccctgctgctgatgctggactaccagcctccccagtttaagctggac
cctcgcctggctcgcctgcttggcattcacactcagactcgctcctgcatcatccaggcc
ctctggcagtacgtcaagaccaacaagctgcaggactcccatgacaaggagtacatcaac
tgtgacaagtacttccaacagatctttgattgcccacggctgaagttctctgagatccct
cagcgtctcaccaacctcctcctgccccctgaccccatcgtcatcaaccatgttatcagt
gtggaccccaatgaccagaagaagacggcctgctatgacatcgacgtggaggtggaagac
cccctgaagagccagatgagcagcttcctcctctccaccgccaaccagcaggaaatcgcc
tcactcgacaacaagatccatgagaccatcgagtccatcaaccagctgaagatccagagg
gactttatgctcagtttctccagagatcccaagggctacatccaggactggctcaaatcc
cagagccgagacctaaagttaatgacagatgtggtgggtaaccctgaggaggagaggagg
gcggcgttttaccacgagccttggtcccaggaggccgtcagccgctatttctactgcaag
atccagcagaggagacaggagctggaacaggccttagctgtccgcaacacctaa
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