Lates calcarifer (barramundi perch): 108895046
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Entry
108895046 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108895046
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
108895046
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
LRR_5
ig
Ig_2
LRR_LRWD1
LRR_9
V-set
LRR_EndoS
LRR_6
LRR_RPS2
Sp38
Receptor_2B4
DUF7617
C2-set_2
C2-set_3
Ig_6
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
108895046
NCBI-ProteinID:
XP_018549228
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Position
LG8:complement(19672097..19712187)
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AA seq
613 aa
AA seq
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MVDCMSKVMLHTVVSCWQPFLGLALVAVFVGSTLGCPSRCECSAQSKAVVCHRKRMPSIP
DGIPTETRILDLSKNKLTMINPDDFVAFPGLEELDLSGNIISYVEPGAFNALFNMHSLSL
KSNRIKLIPLGVFAGLTNLTRLDISDNKIVILLDYMFQDLHNLKFLEVGDNDLVYISHRA
FSGLLSLEILTLERCNLTVVPTEALSHLHNLVSLHLRYLSISTLHPYSFKKLFRLRHLEI
DNWPLLDHVPANTLHGLNLTMLFITNTNLSSFPYQALKHLPYLTHLNLSFNRIRHIEGGM
LMELVRLRELHLVGAQLTTIEPYAFQGLRGLKVLNVSHNRLDTLEKGVFQSPEALEVLLI
DNNPLVCDCRLMWILQKRHSIFFGDSQPECSTPEGIRGRPFKEFKETLLSYYVTCTKPKI
RENKTQTITVDEGQQAMLRCSAEGTPRPIVSWLSPRRRVLTSRSHGRVTVHNNGTLEIKS
AEVQDSGVYLCLASNTAGNDTLMTSLAVKSLGSLYANRTQYYTDPSNTTANGTTGVTLGL
DLKTILVSTAMGCFTFLGVVLFCFLLLFVWSRGKGKHKNNIDVEYVPRSKSNGTNVDSAE
GQAGPRRFNMKMM
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggtcgactgtatgagcaaagtcatgctgcacacggtcgtctcatgctggcaaccattc
ctgggactggccctcgtggctgtctttgtgggctctaccctgggatgtccctcgcgctgc
gagtgttcagcgcagagcaaggcagttgtctgtcaccgtaaacgcatgcccagcatcccg
gacggcatcccaacagagacaaggatcctggacctgagtaagaacaaactgacaatgatc
aaccctgacgactttgttgcctttcctgggcttgaagaacttgacctcagtggaaatatt
atcagttatgttgaacctggagctttcaacgccctgtttaacatgcactcactcagtctt
aagagcaatcgtatcaagctcattcctctaggcgtctttgcaggtttaactaatcttacc
cgactggatataagtgacaacaagatcgtcatcctcctggattacatgtttcaggacttg
cacaacctaaagtttttggaagtgggtgacaatgatctggtttacatttctcaccgtgct
ttcagtggacttttaagcctggagatactaaccctagaaagatgcaatcttacagttgtg
cccactgaggccctctcccacctgcataaccttgtcagcctccatctgcgatacctcagc
atcagcactttgcatccttactcattcaaaaagctattccggctgcggcatttggaaatt
gacaattggcctttgctagaccatgtgccagccaataccctgcatggcctcaacctgacg
atgctgtttataaccaacactaacttgtcctccttcccttaccaagccctgaagcatctg
ccctacctgacacacctcaacctgtccttcaaccgcatcaggcacattgaggggggtatg
ctcatggagctggttcggctgcgagagctccatctggttggtgctcagttaaccaccatt
gaaccgtatgccttccagggcctgcggggtcttaaagtccttaatgtctcacataaccga
ctggatacactagagaagggtgtttttcagtcccctgaggctctcgaggttcttctgatc
gacaacaaccccttggtgtgtgactgtcgtctcatgtggatcctacagaaacggcattcc
atattctttggggattcacagccagagtgcagtacacctgagggtatccgtggcaggcct
tttaaggagtttaaagagactcttctgtcttattacgtaacatgcaccaagccaaaaatt
cgtgagaataaaacacaaacaatcactgtggatgaaggtcagcaggcaatgttgcgctgc
agtgctgaggggacaccaagacctattgtttcctggttgtccccacgccggcgagttctg
acaagtaggagccatggtagagtgaccgtccacaacaatggtaccttggaaatcaagtca
gcagaggtacaagacagcggagtgtacctttgccttgcatcaaacactgctgggaatgac
accctgatgacttcactggcggtgaaaagtctgggatcgctgtatgctaacaggacccag
tactacacagatcccagcaataccactgccaatgggacgaccggtgtgaccctcggtttg
gacctaaagactattctagtgtcaacagctatgggttgttttacgttcctgggagtggtc
ttgttttgtttcctgctcctttttgtttggagcagaggaaaaggaaaacataaaaacaac
atagatgttgaatatgtgcctcggtcaaagtctaatggcactaacgttgactcggcagag
ggacaagctggtcctcgtcgttttaacatgaaaatgatgtga
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