Lates calcarifer (barramundi perch): 108895144
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Entry
108895144 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase DTX2
KO
K06058
deltex [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108895144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108895144
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108895144
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108895144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DTC
WWE
zf-C3HC4
zf-RING_UBOX
zf-UDP
zf-rbx1
zf-RING_2
zf-LITAF-like
WWE_5
Motif
Other DBs
NCBI-GeneID:
108895144
NCBI-ProteinID:
XP_018549303
UniProt:
A0AAJ7Q866
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All DBs
Position
LG20:complement(2825317..2839434)
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AA seq
644 aa
AA seq
DB search
MAIVSGSCARVNGSRNGPSVSATPSGSVGQSQPMIAVWEWQDDLGYWRPYSGQVSAYIER
CLSPRGQRGGGPGSTSICLGQSDPSLSPYLIDIPSLKQFRQDTGKTRSVRRSLFAQSSGL
GSGVYWEWANDEGGWTPYETRTSILLEHSYQARQGTADLGPHGYNYIVDLTSLAQVNKAT
GFRRQVRRQCNLPYPLASSGPPAIPSGPACSCQQCLSHSXSTGPMPSRSRHSFSSGSLNR
PSLQGTGRAAAAHPTSVYSPYPRRPLSVGGMSWGSPWPPPPSGSQLSAPLLTSSASANGL
SVPSISVQLNGSTSVSSALAGMASILMSAVGLGVHFTTAPLPQQQQQQQLQPPPPPPPQQ
PAPFSLPPPLLPPASRPSKPHSSSSSSSVRRAKRQHRRASAQRPEEVIQRYMEVVAGVPD
EDCIICMDQLSNPSGYETPSTEEGGQSILSDTVGKFIKCGHTLHMLCMLAMYNNGTKDGS
LQCPSCKTIYGEKTGTQPKGKMEIYSIAQSLPGHPDCGTIQIIYSIPPGIQGPEHPNPGQ
PYTCRGFPRFCFLPDNDKGRKVLELLKVAWMRRLIFTVGTSSTTGEPDTVVWNGIHHKTE
MMSNLSGHGYPDPNYLDNVLSELASQGVTEDCLKPLGSSSSSSS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgtgtctggctcctgtgccagggtaaacgggtctagaaatgggccctctgtg
tcagctacgccttctggatcagttggacagtcacagcccatgatagcagtatgggaatgg
caggatgacctgggctattggcggccttacagcggccaagtgagcgcctacatcgagcgg
tgtctgtcaccgcggggccagagaggaggaggacccggctcaacgagcatctgcctcgga
caatcagaccccagcctgtcgccttatctcattgacataccaagcttgaaacagtttcgg
caggatacaggaaagacccggtcagtacgtcggtccctgtttgcccagtcttcaggcctc
ggtagtggtgtttactgggaatgggccaatgatgaaggaggatggactccatatgagact
cgaacctctatccttttggagcacagctatcaggcccgccaaggcacagctgatttgggc
ccgcatggatacaattacatagtggatctcacatctctggcccaagtcaacaaagccaca
ggcttcagacggcaggtgcgacgccagtgtaacctcccgtacccactggcctcctctggc
cccccggccatcccctcgggccctgcgtgctcctgccagcagtgtttgagccacagtnnc
agcacaggacccatgcccagccgttcacgacattccttttcatcggggagtctgaaccgg
cccagcctgcaagggacagggagggctgcagcagctcaccccacttctgtctactcgcca
tatcctaggagacccctctctgttggagggatgtcttggggcagcccctggcctccacca
ccttctggtagtcagctgtctgcgccgcttctgacaagctctgccagtgcaaatgggtta
agtgttccctccatctctgtgcagctgaatggatccaccagcgtgagctctgccctggca
ggcatggcctccattttgatgtcagcagtgggactcggcgtgcacttcaccactgccccc
ctccctcagcagcagcagcagcagcagctacagccgccgccgcctccgccaccgcagcaa
cctgctcctttctctcttcctcctcctctcctccccccagccagcaggcccagcaagccc
cacagcagcagcagcagcagttcagttaggagagcaaagaggcagcacaggagagcctca
gctcagagacctgaggaggtgattcagcgctacatggaggtggtggctggagtgccggat
gaggactgcattatctgcatggatcaactgtccaatccatccggctatgagacaccatcc
acagaggagggaggccagagcatcctgtcagacactgtggggaaattcatcaaatgtggt
cacaccctgcatatgctctgcatgctggccatgtataacaatggaacaaaggacggcagc
ctgcagtgcccctcgtgtaagacaatctacggagagaagaccggcacccagcccaaaggc
aagatggaaatttacagcattgcccagtcgctgccaggtcacccagactgtgggaccatc
cagattatctacagcatacctccaggcatacagggcccggagcaccccaacccaggacag
ccatacacctgtagaggcttccctcgcttctgttttctaccagacaacgacaagggcagg
aaggtgctggagctgctgaaggtggcgtggatgcgtcgcctcatcttcaccgtgggtacg
tccagcaccaccggagagcctgacacagtagtgtggaacgggatccaccacaaaacggag
atgatgtccaatttgtcgggccacggctacccggaccccaactatctggacaatgttctt
tctgagctggcctctcagggcgtgacagaggactgcctcaaacctctgggcagcagcagc
agcagcagcagctag
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