Lates calcarifer (barramundi perch): 108895182
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Entry
108895182 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04512
ECM-receptor interaction
lcf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108895182
04518 Integrin signaling
108895182
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
lcf04091
]
108895182
Lectins [BR:
lcf04091
]
C-Type lectins
Lecticans
108895182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
108895182
NCBI-ProteinID:
XP_018549331
UniProt:
A0AAJ7Q843
LinkDB
All DBs
Position
LG14:1869674..1897619
Genome browser
AA seq
2181 aa
AA seq
DB search
MGSQSQMLAWMLLPVLLLGMTCSLHGSLVKVNKGLKVKRGQSAYLDESDLQFHIPRQKDA
CKVEVVLNEPITQRVGKVMPQVFDCHYLADEVKYVHNGCPLLKEDIVKLRLYRFTDSETY
MEVFSLHVDIMEPDCSIIKLGPKSLEVPEFYGLSDAVDGNVVSFHYERRSSLECSIHLSN
HDTHLPAHGQLVTGDPEKATKRGDEPESFIHLRQQLDNKERAMCKSEDCLKGLKLVKFTK
IPCDDFLMMGLRYQHIDPPSPDIDYIAIRLDLKDTRSGSIYQSEQSWIPVRIVGAMPNQP
PKPSFMSMFILEVDQFILTPLSTATLDAEDEETLKQLLVFNITKPPVDGFIAHLTDHTRP
ISSFTWLDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSPSMTVHMSVRNADTNAP
RVSWNMGLSLLEGQSRPITWEQLQIVDNDNLNAVRVITVDGLQHGRLTVRGGKGFMFTVN
DIRAGVVRYHHDDSDSTKDFIIFRITDGRHQTRHKFPIKILPKDDSPPFLITNMLLEVSE
GQTALLRGSTLQASDLDSSDDYILFNITRPPQAGEVMKIPGPGLTGYPVSHFLQRDLSQS
MLYYRHLGNEVFDDSFEVVLSDFHDPPNLSQPQVVMVHIEPVPDQPPKEVPGSSRCLVVK
ETEVVHITRQHLHFVDQESPDSELTYTVTTPPFYTGPHSTPDAGRLFLVDSIPKFTKDSS
APVLRLFTQHAVNFMKVAYMPPIMDIGPYPQYIQFVLSVTNRLGKTVTGICFNITVMPED
NQPPQVITNALTVDEGGECWLGPEHLLLSDVDSMEEVLQVELQREPQHGALQLGGLLLKP
GQAFTVQDLKSFKVRYNHDSSETVEDNIEFTATDGTNSVSFVLQVKVKPINDEVPVLVAG
LKPVLSCAEGQEIVITAEYIYASDADSDNSSLAFLIARQPYHGVVLRNGVVVDRFIQADI
TAGIITYKHTGLEIGLTPRHDTITFVISDGETENSALCCGGGNPIRTRGTAQHRDSLPVY
DLHITVFPVDSQPPSLTTGDIFMVDEGGTAPIIASHLKASDVDTVQDELVVSLISPPQFG
YIENVLPSPGFEKSNMGISIASFSYKDLIDGHVNYVQSRHQRMEPTADQMMLCVSDGKHT
SAHVPFYIIINPTNDEIPEFMARNITVREGEMKQLDSSVLHAMDLDVPRNTLLFSIVKPP
HHGSIINHDNEKAVNKRREASPQSPVVDFTMTDLINGMDLMYVHDDSENMVDSFTIQLTD
GKHQLHRQVMVKVLPTNDEEPHIIRNNGLEVEPGETRLISSVTLFAQDNDTPSSEVMYIF
ESVPTQGLLQLKEGPDWVTLTAGRNCTQETVDMNLLRYVHTGLHAAKTQDFFVFHLLDGK
NQSPPQHFHISVKDLEKGNIAIFVKPVNVSRGDRVVLTTDVLLATDGTEKPEELLYTITN
APTQGHIEYIKHPGLAISTFSQMDIAANLVAYVHDNRASTRRETFQFVVSNSKTSRNGSF
EITVEMVDRILPSLSSNKGITVPQGSSIILGPDCLALSDPDTPPSALTFTLLQPPQYGRL
LLAGTTLTAGSNFTYGHIQELEVSYKHDGGPSQIDRFAFTASDTTNRGFLLDGQLHLEPV
YFTIQIKPLDKLPPEVVKILDLWKAEVLDDGRYGIFLSSRELKAQDSDSREEELIFCIVR
PPYFGYLENITTGGFVPQRFSQTELNKRTIVYIISPERESLSDSLEFRVSDPLGNTGPSH
ILEFSWSSVELSQPEYSVCEEQGGGSLDIIRKGNLAESSYITVKLKAVTATAGKDFLISP
SSLIQFDPGVSKRSWQIEIIRDHLEEAEEMFEVLLISPEGTVIGTINRAQVTIRDSGQCR
LNQDQEAPVLGGKEIRSDTYPQHGSIQLEKLPLGTESVIWARGDSISRPASLPKKKLRVT
GNPKSIAPSSVFHNGTDIVYTYHGIMQMRVEDDTSPSRKGRKANIRVVSRGAQQQVSAVP
TDSKLDAKRKVSKSQKSALAKVRATADNSIPKPCVPELMGLLHFNQTTNQLFHCNGVSWK
PWAPTDQIVSAQMCPQGWTFHGGHCYILSTEHKATWSTANRACRERYKGTLASVLSKVDM
DWLWNFSGRKPFWIGLNDREGRGRWEWAGGEPVSYTNWRKTPPRSKMKGTKTCVLVWRRA
KWQIRDCKTSRGHRFVCSVKT
NT seq
6546 nt
NT seq
+upstream
nt +downstream
nt
atgggttcacagagtcaaatgctggcctggatgttgcttccagtgcttctgttgggaatg
acctgctcattgcacggctccctcgtcaaagtcaataagggtttaaaggtgaaacgaggt
cagtcggcctacctcgatgagagcgacctgcagttccatattccccgtcagaaggatgcg
tgcaaggtggaggtggtgttaaatgagcccataactcaacgagtgggaaaagtcatgcct
caggtctttgattgccattatctggctgatgaggtgaagtatgtccataacggctgtcca
ttgctaaaagaggacatagtcaagcttcgactgtacaggttcacagactcagagacttac
atggaggtgttttctctccatgtggacattatggaacctgactgcagcatcataaagctc
gggcctaaatccttggaggttcctgaattctacggcctctctgatgccgttgatggcaat
gtggtgtccttccattatgagaggaggtctagcctggagtgtagtatccatctgagcaac
catgacacccacctgccagcccacggccagctggtcaccggggatccagagaaagccacc
aagagaggggacgagcctgagagcttcatccacctacgtcagcaactagataataaagag
agggcgatgtgtaagtctgaagactgcctgaagggtctgaagctggtgaagttcactaag
attccctgtgatgacttcctgatgatggggctgaggtatcagcacatagaccctccatct
cctgatatagactacattgcaatcagactggaccttaaggacaccaggagtggcagcata
tatcagtctgagcagtcctggattccagttcggatagtcggtgcaatgcccaaccagcct
cccaaaccatccttcatgtccatgttcatcctggaagtagaccagttcatcctcactcca
ctctccactgctacactagatgctgaggatgaggaaactctcaaacaacttttggttttc
aacatcaccaaaccccctgtggacggcttcatcgcccatctgaccgatcacactcggcca
atctcctccttcacatggctggatttaaatgacatgctcattgggtatcaacctcccaac
tcctcacatacccaacgcaggaattacgaggtggaatttgaggttcatgattttttcttt
gagaagagcccatcaatgactgttcacatgtctgtaaggaatgccgacacaaatgcaccc
agagtgtcctggaacatgggcctcagcctgttagaggggcagtctcgtccaataacatgg
gagcagctccagattgtggacaacgacaacctgaacgccgttcgtgtcatcactgtggac
ggtctgcagcacggacggctaactgtcagaggtggaaaaggctttatgttcactgtcaat
gacatcagagcaggtgttgttcgctatcaccatgacgacagcgactcaactaaagacttc
attatcttccgtatcaccgatggtcgccatcagaccaggcacaaattccctatcaagatc
ctgccaaaggatgacagccctcctttcctcatcaccaacatgctgctggaggtgtctgag
ggccaaacggctctgctgaggggctccaccctccaggcttcagacctggactccagcgac
gactacatcctctttaacatcacccgccccccacaagcaggagaggtcatgaaaatccca
ggaccagggctcacaggttatcctgtcagccactttctgcagagggacctgtctcagtcc
atgctgtactaccgacatcttgggaatgaggtgtttgatgattcctttgaggtggtgctg
tctgatttccatgaccctcccaacctgtcacagcctcaagtggtgatggtgcacatagag
cctgttccagaccagccacctaaagaggttcctggttccagccgatgtctcgtggtcaaa
gaaactgaagtggtccatataacaagacagcaccttcactttgtagaccaggagtcccca
gacagtgagctgacatacacagtcaccactccacctttttacactggtccccacagcact
cctgatgctgggaggttgttcctggtggacagcatccccaaattcaccaaagactccagt
gcaccagtgctgaggctcttcacacagcatgcagtgaacttcatgaaagtagcctacatg
cctcctatcatggacatcggcccttacccccagtatatccagtttgttctctctgtaacc
aaccgtttgggcaaaacagtcactgggatctgctttaacatcactgtgatgccagaagac
aaccaaccaccacaggtgatcaccaacgctctgacagtagacgagggaggggagtgctgg
cttggccctgaacacttactgctgtcagacgtggactccatggaagaggtcctgcaggtg
gagctgcagagggagccacagcatggagctctgcagcttggaggcctcctgctaaaacca
ggccaagctttcactgtgcaagacctgaaaagctttaaagttaggtacaatcacgacagc
tcagaaactgtggaggacaacattgaattcactgcaacagatggcaccaattcagttagt
tttgtcctacaagtgaaggtgaagcccatcaatgacgaggtcccggtgttggtcgctggt
ttgaagccagtactcagctgtgcagagggacaggaaatagtcatcacagcagagtatatc
tatgcctctgatgcagacagcgacaacagcagcctggccttcttaattgcccggcagcca
tatcacggtgtggtgctgcgaaatggtgtcgtggttgatcgcttcatccaggcagacatc
actgcagggatcatcacctacaaacacacaggactggagattggtctcactcctcgccat
gataccatcacctttgttatttctgatggagaaacagaaaactctgctctgtgctgcggt
ggaggaaatcccatcaggaccagaggcacagctcagcatcgggacagcctgcctgtgtac
gacctccatatcacagtgtttccagttgacagccaaccaccttcacttacaacaggagac
atctttatggtggatgaaggtggaactgccccaataattgcgtctcatttgaaggcctct
gatgtggacactgtccaggatgaactggtggtcagtctgatttctccaccccaatttggc
tacattgaaaatgtcctacccagtcctggttttgagaaaagcaacatgggcataagcata
gcttcattttcatacaaagacctcattgacggtcacgtgaactatgtacagtccagacac
cagaggatggagcccacagctgaccagatgatgctctgcgtgtcagatgggaaacacact
tctgcccatgtgcccttctacattattattaatccaacaaatgatgagatcccagagttt
atggctcgtaacatcacagtacgagaaggagagatgaagcagctggactcatcagtgttg
cacgcaatggatctggatgtccccaggaacaccctgctgttcagtatagttaaaccccct
catcatggcagcatcattaaccatgacaatgaaaaggcggtcaacaagagacgagaggcc
agtccccaatcccctgtggtcgactttacaatgacagatcttattaatggtatggatctg
atgtacgtgcacgacgactctgagaatatggtcgatagctttaccatccagttaactgac
ggcaagcaccaactccacagacaagtgatggttaaagtgctgccaaccaacgatgaagag
cctcatatcataaggaacaatgggctggaggtggaaccaggagagactcggctcatatcc
agtgttacactgtttgcacaggacaatgatactccctcttcagaggtcatgtacatattt
gagagtgttcctacccaaggactacttcaacttaaggaaggtccagactgggtgacgctg
acagctgggagaaactgcacccaggaaacggtggacatgaaccttctgcgctatgtgcac
acaggcctgcacgctgccaaaacacaggacttctttgtcttccacttgctggatggaaag
aatcaatcacccccacagcacttccacatctctgtcaaagatcttgagaaaggaaatatt
gccatctttgtaaagccagtgaacgtcagtcggggcgatcgtgtggttctcaccacagat
gtgctgctagccacagacggcacagaaaagcctgaggagcttctgtacaccatcaccaac
gctcccactcaaggacacatagagtacatcaaacatcccggactggccatctccaccttc
agccagatggacatagcagcaaaccttgtagcttatgtgcatgacaaccgagccagcaca
cgcagagaaacctttcagtttgttgtgagtaacagtaagactagtcgaaacggaagcttt
gagatcacagtggaaatggtggatcgcatcctgccctctctgtcctctaacaaaggcatc
acagtcccccaaggttcctccattatcctgggtcctgactgcttggccctttctgaccca
gacactccacccagcgccctgacctttaccctcctccagcctccacagtacggcaggctg
cttttagctggcaccacactaactgctgggtcaaacttcacctacggacacatacaagag
ttggaggtgtcatataaacatgacggagggccgtcacagattgacaggttcgccttcact
gcctctgacaccaccaatagaggcttcctcctggatgggcagttacatttggaacctgtg
tatttcaccatacagatcaagcctttggataagttacctcctgaggtggtgaagatactc
gatctttggaaagcagaggttttagatgacggacggtacggcatctttctgtcatcccgg
gagctgaaggcccaagactcggacagcagagaggaagaactgatattctgcatcgtccgc
ccaccatactttggctacctagaaaacattactacaggtggttttgtgccacagcgcttc
tctcagacagagctgaataagagaaccatcgtctacatcatcagtccagagagggagtct
ctctcagacagcctggagttcagagtgtctgatcctttagggaacactgggccatcacac
atacttgaattcagctggtccagcgtggagctgtctcagcctgagtactctgtgtgtgag
gagcagggaggcggctcgctggacatcatccgcaaaggaaacttagcagagtcctcatac
atcacagtcaagttaaaggcagtgactgcaacagctgggaaagatttcctcataagccct
tcttccctcattcagtttgatccaggagtgtcaaagaggagctggcaaatcgaaatcatt
cgggatcaccttgaggaggctgaggaaatgtttgaagtgctgctgatctcccctgaaggc
acagtgattggcaccatcaatagggctcaagtcaccatcagggactcaggacagtgtagg
ctgaaccaggatcaggaggctcctgtccttggaggaaaagagatcaggtcagacacatac
ccccagcatggatccattcagctagagaaactgcctttaggcactgaatcagtcatctgg
gcccgtggagacagcatctccaggcctgcaagtctcccgaaaaagaaactgagagttaca
ggcaatccaaagtctattgcaccatcctcagtttttcacaatgggacagacattgtttac
acgtatcacggcatcatgcaaatgcgagtagaagatgacacctctccatccaggaaaggc
agaaaagcaaacatccgtgtggttagcagaggggcacagcagcaggtgtcagcagtgcct
actgactcaaaactggatgctaaaagaaaggtctcaaaatctcagaaatctgcactggct
aaagtacgtgctacagctgataactccatccccaagccctgtgtgccagaactgatggga
ctcctgcatttcaaccaaaccaccaatcagctctttcactgcaatggtgtctcctggaaa
ccctgggcaccgactgatcagatagtgagtgctcagatgtgtcctcagggctggaccttt
catggtggccactgttacatcctcagcactgagcacaaagccacctggagcacagctaac
agagcctgcagggagagatataaaggaactctagcaagtgttctctctaaagtggacatg
gactggctgtggaacttcagtggaagaaaaccattctggataggtctgaatgacagggaa
ggcagaggacgctgggagtgggcaggcggcgagccagtcagctacaccaactggagaaag
acgccccctcggtcaaaaatgaagggaaccaaaacgtgtgtcctggtgtggagaagggca
aagtggcagataagggactgtaaaaccagcagaggtcatcgctttgtgtgttcggtcaag
acttga
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