Lates calcarifer (barramundi perch): 108895217
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Entry
108895217 CDS
T04895
Name
(RefSeq) TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108895217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108895217
03036 Chromosome and associated proteins [BR:
lcf03036
]
108895217
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108895217
Coactivators
SAGA/TFTC/STAGA complex
108895217
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108895217
STAGA complex
108895217
TFTC complex
108895217
SAGA complex
108895217
SLIK complex
108895217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Motif
Other DBs
NCBI-GeneID:
108895217
NCBI-ProteinID:
XP_018549390
UniProt:
A0A4W6EB50
LinkDB
All DBs
Position
LG14:757961..766720
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AA seq
643 aa
AA seq
DB search
MAEREERRFAEISRESVKLMAESAGVELGDDVAGLLAEDVCYRLREATQSSSQFMRHAKR
RKLTVEDFSRALHWSNVEAICGYGAQDALPFRSVKEGEFFFIEDRDINLVELALATNIPK
GCAETMVRVNVSYLDGKGNLEPQGTVPTAVQSLSDDMLKYYQQITRAILGEDPHLMKVAL
LDLQSNSKIAALLPYFVYVISGVKSVSHDLEQLNRLLHMVKSLVQNPYLYLGSYVRSLVS
SVMYCILEPLAASINPLNDHWTLRDYAALLLSHIFWTHGDLVSGLYHQILLSLQKVLSDP
VRPLCSHYGAVVGLHALGWKAVERVLFPHLPAYWANLQAVLDDYSVSNAQVKADGHKVYG
AILVAVERLLKMKALSLSQPAEGGSSSQTGSVLGAMGYRVSSPGLSPPPEPLSEATLGIA
SHLQAGGAGCPWEEWSPVPLPAMYSELYSFFGDSLAVRFSTGPGFGSYPSCTPSQLSDAR
KEPPGPTSNPDTTRKMPQLTANLNISPRHDGSPRTDPPPPSLAATGSGRSLTRSSSSSAS
VQRSRSSLSRSGQRSAGLSRDVFPKARFTSPQTGPPAFSFLIGGRQMGRRCQGRRPFQTT
FVPTPPLSAIPSRAYAHKLPVIGRVGKPVHRWACSHYSLHLPL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcgggaggagcgccgcttcgccgagatttcccgagaatctgtcaaactcatg
gccgagagtgcaggcgtggagctcggcgacgatgtggccggtctgctggctgaggacgtg
tgttaccggctcagggaggcgacacagagcagctcacagttcatgagacatgccaagagg
aggaagctgacagtggaggacttcagcagagctctgcactggagcaatgtggaggccatt
tgtggttatggggcccaggatgctctgccttttcgttcagtgaaagaaggagagtttttc
ttcattgaggatcgagacatcaacctggtggagttggctctggccaccaatattcccaaa
ggctgtgctgagaccatggtacgagtgaacgtgtcatacctggatgggaaaggcaacctg
gagcctcaagggactgttcccacagcagtgcagtctctatcagatgacatgttgaagtac
taccagcagatcacacgggccatactgggagaggacccccacctcatgaaggtagctctg
ctggacctgcagtctaattccaagattgctgccttgctaccttattttgtttatgtcatc
agtggggtgaaatcagttagccatgacctggagcaactcaacagactcctccacatggtg
aaaagcctggtccagaacccctacctgtacctgggctcatatgtccggagcctggtctcc
agcgtcatgtactgcatcttagagccactagctgcttccatcaacccccttaacgaccac
tggaccctcagggactatgctgccctgctcctcagccatatcttctggactcatggtgac
ctggtgagtggtctctaccatcagatcctgctgtcgctccagaaggttctgtctgatcca
gtaaggcctctttgctcccactatggagctgtggtggggcttcacgctctgggatggaaa
gctgttgagagagttctctttccacaccttcctgcctactgggccaacctccaggctgtg
ttagatgactactctgtttccaatgctcaggttaaagcagatggacataaggtctatgga
gccattctggtggcagtagagcgcctgctgaagatgaaggctctgtccctgtctcagcca
gcagagggaggctccagcagtcagacaggctctgtgctgggtgctatgggatacagagtg
agctcccctggcctcagcccccctccagagcctctgtcagaagccactctagggattgcc
agccacctccaggcgggaggggcgggttgtccctgggaggagtggagcccagtccctcta
cccgccatgtacagtgagctctactccttctttggagacagcctggctgtcaggtttagt
actggaccagggtttggcagctacccctcttgcaccccatcccagctcagtgatgccagg
aaggaacctcctggacccacatccaaccctgacaccacccgtaagatgccacagctgact
gccaacctcaacatcagccccaggcatgacgggagccctcgcactgacccacccccaccc
agcctggctgctacagggtcaggaaggtccctgactcgctcctcctcctcctccgcctca
gtgcagcggtccagatcttccttgtcacgctcaggtcagcgctcggcaggtctgtcacgt
gacgttttccccaaagctcgcttcacctctcctcagaccggacccccggcgttctccttt
ctcattggtgggcgacaaatgggccgtcgttgccaaggccgccgcccattccagaccact
tttgtcccaactccacctctctctgccatcccatcacgtgcctacgcccacaaattgcct
gtcattggcagggtgggtaaacctgtgcaccgctgggcatgttcccattactctcttcac
ctgcctttatag
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