Lates calcarifer (barramundi perch): 108895316
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Entry
108895316 CDS
T04895
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108895316
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108895316
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108895316
NCBI-ProteinID:
XP_050932431
UniProt:
A0AAJ8BGG0
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Position
LG16_LG22:22317271..22428318
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AA seq
610 aa
AA seq
DB search
MSLEQVEPIILGRLDQILEEKLAVHLPKTREVREAPLGCLCPPGPPGAPGEPGLSIIGPR
GPPGQPGTRGFPGFPGPIGLDGKPGQNGLKGDVGQRGPKGQPGEPGPKGEKGVCGDYTHR
GLFVQDLPLKTLAALRSSQALMLKGEPGVQGPPGPPGPPGLPGTPGLNGANGSPGKPGEP
GKPGKDPRLLPGLKGEPGVPGQKGDQGDVGPPGPEGPKGVKGDQGIKGDEGNLGFPGERG
EKGEPGFPGTPGLKGQAGIPGTPGIPGKRGYRGEAGPEGPAGPRGPPGPTGEPGKAEIHN
NENDIRNIPLMGPPGLPGPPGPPGLPGAKGEVGLPGPPGLDGEKGPRGKPGEPGPAGPSG
PEGPRGEGGVMGFPGPKGDKGDMGPSGSPGLDGPTGEKGATGAPGPIGLPGTMGPKGESG
EGARSEMIYGPPGPPGPPGPVGPAGSQGPSGPKGEPGIGIRGEKGATGQKGDKGDRGHLG
LPGAHGLDGRPGPVGLIGPAGVPGPAGPKGERGGKGDIGLPGPTGPQGIPGLVGPQGLKG
NRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGFRGFKGEKGEPGLPGLDGLDAPCPVGDD
GLPVPGCWNK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcactggagcaggtggagcccattatcctgggccgcctggaccagattctggaggag
aagctcgcagtccatctaccgaagacacgagaggtgagggaagctcctctcggctgcttg
tgtcctccaggacctccaggagcaccaggcgagccaggtctgtctatcattggaccaaga
ggacctcctggacaacctggaacaagaggatttccaggctttccaggtccaattgggttg
gatggcaagcctggacagaatggactgaagggagacgtgggtcagcgaggtcctaaagga
cagccaggggaacctggacccaaaggggagaagggcgtatgtggagactacacacaccgg
ggcctctttgtacaggatcttccattgaaaaccctggctgccttgcgctccagtcaggct
ctgatgttgaagggtgaacctggagtgcagggacccccaggacccccaggaccacccgga
ctcccaggaacccctggcttgaatggagccaatggctcaccgggtaagcctggtgagcca
ggcaaaccaggaaaagacccaaggcttttaccaggactgaagggtgagccaggtgtgcca
ggacaaaagggtgatcaaggcgatgtaggcccaccaggtcctgaaggcccaaagggagtt
aaaggtgaccaaggaattaagggagatgaaggaaatctgggtttcccaggagagagggga
gaaaagggagaaccaggtttcccaggcactcctgggttaaagggccaggctggcatccct
ggtacccctggcatccctggcaagaggggctacaggggggaagcaggtcctgaaggccca
gctggaccaagaggtcctccaggcccaactggggagccaggaaaggctgaaatccacaat
aatgaaaatgatattcgcaacatacccctgatgggtccccctggattacctggacctcca
gggccccctggcctccctggtgccaagggtgaagttggtttaccaggtccaccaggactg
gacggtgagaagggacccagagggaagcctggagagcctggtcctgcaggcccatctggc
cctgaaggtcctagaggggagggtggtgtcatgggcttccctggacccaagggagacaag
ggagacatgggtccatccggatcacctggtttagatggccctacgggtgaaaagggggct
acaggggccccaggccctattggattacctggcacaatgggtcctaaaggcgaatctgga
gaaggagcgaggtcagaaatgatctatggtcctccagggccccccggacctccaggacca
gttggcccagcaggatctcaaggaccttcagggcctaagggagagccaggcattggcatc
agaggagagaagggagcaacaggtcagaagggtgacaaaggagacagaggccatcttgga
ctccctggggctcatgggttagacggcagaccgggtccagtgggtctaataggaccagca
ggtgtaccagggccagcaggaccaaaaggagagagaggtggaaagggagacataggatta
ccaggaccaactgggcctcaaggcatccctggtttagtaggaccacaaggactcaaaggg
aaccggggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaa
ggagcacctggattagatgccccctgtccattgggtttccgaggctttaaaggagagaaa
ggtgaaccaggcttgccaggcctggacgggctggatgccccttgccctgtgggggacgat
ggcttacctgtaccaggctgttggaataaatga
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