Lates calcarifer (barramundi perch): 108895350
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Entry
108895350 CDS
T04895
Name
(RefSeq) rab11 family-interacting protein 1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108895350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108895350
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
108895350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
DUF4635
DNA_topoisoIV
Motif
Other DBs
NCBI-GeneID:
108895350
NCBI-ProteinID:
XP_018549627
UniProt:
A0A4W6FKV4
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All DBs
Position
LG8:complement(18227723..18240650)
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AA seq
1467 aa
AA seq
DB search
MMSLIDLDDDQRWVPTHVNVTVLRARGLRTKGKHGSRYLYTIIQVGKEKYTTGLVEKAEV
PEWNEECCFELLPGILEDGGRSAYPPGSGDLVLTVMHRVLIGLDVFLGQTIIPLDKIFQE
GMCPRDEWFKLNSKAGRKEKERGELQVTVQFTRNNMTASMFDLTIKDKPRSAFGKLKDRV
TGRKRGDLESSSAIVPGRYAALSGSLGQPFGEEGGGVVETRDVEIAEEKRSKMKDFFKGK
LRKSSDTRSCSSLASESSMSSMASDNPGPPPSLDLLSDPPSSPIYTSKVRVDTHYGEPDL
AKKVLTSQHTTKVLTHKRALSDEASKITTAFPRTNLAVESLKGQTMTQSKSSLCINGSHV
YDSEPSTPKTAGALPSKLVLLEKCSPLSRSLQNLTKRSEDKGSYADGRRWSFDRTKKEEK
EEEKEAQTSSPPIQQAQTGGCPVQAAMPIVSSAAESPEKGRKLRKTLFSGGRSDSLPAKS
DLNQAASASEGRLRGWFGSSDSQNKPRLEVSPKVESSSDVPPPLPPRSPIPPQCSSPSGH
VSPDDCSQSHPFTPSSSPSSTPISPSNPFLPRMQRNPFFEELIAEESQRSPPIAPCSSSG
LSPFHYTTLPSQPCTPSPAHDVNATNMASIKRERPRPVARQISLPAILPKTATPNSHNHA
APRSMSESAGEWDDCFDAFASSRLNSPKSSLPQKQQRTSPTSSHRRSYPVNNNTNNHAQQ
LQTCEEEPPPLPPRRLLRTSVNEIYSDGWLHRGQELAVHKEAYLLSQTGVASLQRGREGE
CKRNSISPDPHTSSETSDSLSAHSQPYTNITSPGCISEEKLKKFKYEPLEDDTDCWGGML
FEQDLYGRMCRGNYGQPKVNSHRLSWNTEETAGNNITCKNSGPKMLLDTEISVTDLLNMS
TKTSPNPDIKVLDCTSSPVEEAVESNPTEATCINNNVSFSLTLGDLNMNANNLDFSFIDS
DGSSQSEVVDTLKGISSLGEIFPQPTEGSPTAVYHEETTPEDMFTLKDTYIPGMNTSIEI
TASLNKLCKVSPVCQNSCQDCQCELNSVASRGHSRVNSRDLTMLSQNQMSNLSDLETGPR
EDKTRGDNNCKKTEKDFDDNGNPQAKQTELFSGVVSARFRPKGVSRQSSSGSPNSQSKNE
DKEFEQLLSLVQNISEVSEGPLSYQPTKSALSSLLALDKQTDLQVDSTSTTSQISLKDDT
ASLPTENCVTRKPSVISFEDLHAKVAPNTRTPSKAKIGQSLQEPEPSSPSIPSALSPSAD
AQAKLHPTPVCPSIHPSSMGPSAGASTTLVVAPYTSSSSSSYSTTSTTDQPLVDARHTLL
PEETQPASNLPHQESRPHPVKPLTSSQSEKKEGRSVLEKLKSTIHPGRASQQVVAEPERS
QEVTVDNSAQYQHLTNMELISLLLQQEMDMQKQQAASEQQGAQLEKCEAELKKVKSQVRD
LEDYIDNLLLRIMEQTPTLLQVRTRHK
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcactgatagatctggacgatgatcagcggtgggtgcccacacatgtgaatgtc
accgtcctccgcgcgagaggactgcgaaccaagggcaagcacggcagccgctacctctac
accatcatccaggtggggaaggagaagtacactaccgggctggtggagaaggcggaggtg
cccgagtggaacgaagaatgctgcttcgagctgctccccgggatcctggaggacggcggc
cggagcgcctaccccccggggagtggggacctggtcctcacggtcatgcatcgggtgctc
atcggactggacgtgttcctcggtcaaaccatcattcctcttgataagatatttcaggag
gggatgtgtccaagagatgagtggttcaagctcaactctaaggcaggaagaaaggagaag
gagcgtggtgaacttcaggtgacagtccagttcacccgcaacaacatgacagccagtatg
ttcgacctcaccatcaaggacaaacctcgctctgcttttggcaagctcaaggatcgtgtc
acagggaggaagaggggggatctggagtcttcctcagccattgtgccaggccgctatgcc
gctctgtcaggatccctggggcagccgtttggagaggagggcggaggggtggtggagaca
cgagatgtggagatagcagaggagaagaggagcaagatgaaagacttcttcaaaggaaag
ctgcgcaagtcgtccgacaccaggtcatgctcatcgctggcttcagagagtagtatgtct
tccatggctagtgataaccccggccctccacccagtctggatctgttgtcagaccctccc
agctcccccatctacacaagcaaagtgagagtggacacacactatggagagccagattta
gctaaaaaagtgctcaccagtcagcatacaacaaaggtcctcacacacaagcgagccctc
agcgatgaggctagcaagatcacaacagccttccctcgaacaaatcttgcagtggagtct
ctcaagggtcagacaatgactcagtccaagtcttccttgtgtataaatggaagccatgtc
tatgactctgagccatccactccaaagactgcaggagccctaccgtccaagctggtcctg
ctggaaaaatgttccccactctctcgttccctgcagaacctcaccaagagaagtgaagac
aaaggttcgtatgccgatggccgccgctggtcctttgacaggacgaagaaagaggaaaag
gaggaagaaaaggaagctcagacatcatctcctccaattcagcaagctcagacagggggt
tgccctgtgcaggcagcgatgccaatcgtttcctctgctgctgaatcgcctgaaaaaggg
aggaagctgaggaagacgttattctctggagggaggagtgattctcttccagctaagtca
gacctgaaccaggctgcttcagcatctgaggggaggctcagaggctggtttggctccagt
gactcccagaacaagccaaggctggaagtttctcctaaggtagaaagcagctcagatgta
ccccctcccctccctcctcgctcccctatcccccctcagtgctcctctccctccggtcat
gtctcacctgatgactgcagtcagtcccatcccttcaccccctcctcctctccctcctca
actcccatctccccctccaaccccttcctcccacgtatgcagcgcaaccccttctttgag
gagctcatagctgaagagtcgcagaggtcccctcctattgcaccttgctcctcttctggc
ttgtccccctttcattacaccactctgccctcccagccctgcacacccagccctgctcat
gatgttaatgctacaaatatggcttccataaagcgagagcgccccaggccagtagctaga
cagatatctctccctgcgatattacccaaaacagccacacctaactcccataaccatgca
gcccctcgttccatgtcagagagtgcaggagaatgggatgattgttttgatgcttttgcc
tctagcaggctcaactcacctaaaagtagtcttcctcagaaacagcagcgaaccagtcca
acttcatctcatagacgtagttatccagttaataacaacaccaataatcacgcacaacag
ctgcaaacatgtgaagaggagcctccacctttgcctcctaggagacttttaaggacctca
gtgaatgagatttactctgatggctggttgcacagaggtcaggagctagctgtccataaa
gaagcctacctcctctcacagaccggcgtggcctcactacaacgtggaagagaaggcgaa
tgcaaaagaaatagtatatctccagaccctcacacgagcagtgagacctcagactccctc
agtgcccactcacaaccatacacaaacattacatcaccaggatgcatctctgaagaaaag
ctcaaaaagttcaaatatgaacctttggaagatgacactgactgctggggagggatgttg
tttgagcaagacttgtatggacgcatgtgtagaggaaattatggacaacccaaagtaaac
agtcatcgcttatcatggaacactgaggaaactgctggaaataacatcacatgtaagaac
tcaggacctaaaatgcttcttgatactgagatatctgttacagaccttttgaacatgtca
actaaaacttcccctaacccagatataaaggtactagattgtacttctagtccagtagag
gaggcagtagagtctaatccaactgaagccacatgcatcaacaataatgtgtctttctca
ttaacgttgggagacctgaacatgaatgcgaataacttagactttagttttattgattct
gatggctcctctcagtcagaggtagttgatactctcaaaggcatcagcagtttaggcgag
attttcccacaaccgacagaaggttcaccgacagccgtttaccacgaggagaccacacct
gaggatatgttcactttaaaggacacctacataccagggatgaacacctcaattgaaatc
actgcctctttgaataaactgtgcaaagtgtctccagtttgccaaaacagctgccaagat
tgtcagtgtgagctgaatagcgtggcatcacgtggtcattcaagggtaaacagcagagac
cttactatgttgtcacaaaatcaaatgtctaatttgtctgatcttgaaactggacccaga
gaagataaaacaaggggtgacaataattgtaaaaaaacggaaaaggactttgatgataat
ggcaatccacaagctaagcagacagagttgttttccggagtggttagtgcacgttttaga
ccgaaaggagtatcccgacagagcagcagtggcagcccaaacagccaaagcaaaaatgaa
gacaaagagtttgaacagctgttgtccctcgttcaaaacatttcagaagtcagtgaagga
ccattgtcgtatcagcccactaaatcagctctttcttccttattggcattagataaacag
acagatttgcaagtagatagcaccagtacaacatcacaaatatctttgaaagacgacaca
gcgtctctccctacagaaaactgtgtaacaagaaaaccctctgtgatcagttttgaagac
ctccacgcgaaagtagcaccaaacacgagaaccccttcaaaggcaaagattggacaatct
ttgcaagagcctgaaccctcttcaccctccattccctccgcactctccccgtccgctgat
gcacaagctaagctccaccctacccctgtctgcccctccatacatccctcaagcatgggg
cccagtgctggagccagcactactctggttgtggccccctacacctcctcctcctcctcc
tcctactctaccacctccaccactgaccagcccctggtcgatgcacggcacacacttttg
cctgaggagacacagccagctagcaacctgccccatcaggagagcagacctcatccagtg
aagccattaacctccagccaatcagagaagaaggaggggcgttcggttctggagaagctc
aagtctacaatccaccctggacgtgcctcccagcaggtcgtagctgaacctgagaggagt
caggaggtgactgtagacaactctgctcagtaccagcacctgaccaacatggaactgatc
tccctgctgctgcagcaggagatggacatgcagaagcagcaggcggcctccgagcagcag
ggggcgcagctggagaagtgcgaggccgagctgaaaaaggtcaagtcacaggttcgagac
ctggaggactacatcgataatcttttactgcggatcatggagcagacgcccactctgctt
caagtccgaaccagacacaagtga
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integrated database retrieval system
