Lates calcarifer (barramundi perch): 108895402
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Entry
108895402 CDS
T04895
Symbol
cul4b
Name
(RefSeq) cullin-4B
KO
K10609
cullin 4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03420
Nucleotide excision repair
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108895402 (cul4b)
09124 Replication and repair
03420 Nucleotide excision repair
108895402 (cul4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108895402 (cul4b)
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108895402 (cul4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108895402 (cul4b)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
108895402 (cul4b)
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
108895402 (cul4b)
TCR (transcription coupled repair) factors
Cul4-CSA complex
108895402 (cul4b)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108895402 (cul4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
DUF3292
Motif
Other DBs
NCBI-GeneID:
108895402
NCBI-ProteinID:
XP_018549726
UniProt:
A0AAJ7VEI8
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All DBs
Position
LG8:16565295..16575909
Genome browser
AA seq
873 aa
AA seq
DB search
MFPTGLSSPNPPPPPTQEARPAATDVKNDSGNITSPKKRKINGSEREDTTDTISSSPPKT
LNSSSTSSSSSCSPTPLHIQKKLRFEDSVDFIGLDVKMAEEAAAAAAAAAAAAASCSNNK
SKAVFLPGGVGHHANGLTKTAGSGTFSNSKPGAAKKLVIKNFKEKPKLPENYTQETWQKL
KEAVEAIQNSTSIKYNLEELYQAVENLCSHKISAKLYKQLRAVCEDHIKAQIDQFREDAL
DSVLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDL
KVQSKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAE
GQRLMQEREVPEYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLSATLQKG
LTHLLDENRIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELL
DFKDKVDHIIDVCFMKNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATD
EELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAA
FTSKLEGMFKDMELSKDIMVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPPE
MVRLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGE
EFTLEEIKLATGIEDSELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFR
IKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFP
VKPADLKKRIESLIDRDYMERDKENPNQYNYVA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgtttccaacaggtttatcttcccctaatcccccaccaccgccaacccaggaggcaaga
ccagcggctactgatgtcaaaaacgacagcggtaacatcacatctccgaagaagaggaaa
ataaacggctcagagagggaagacactactgacacgatctcctcttcgcctcccaagacc
ctgaattcctcctctacttcctcctcctcctcctgctctcccactccgctgcacattcag
aagaagttgaggtttgaggattcagtggatttcattggactggatgtgaaaatggctgag
gaggctgctgctgccgccgctgccgccgccgccgccgctgcttcgtgctctaataacaaa
agcaaagccgtgttcctgcccggtggtgtggggcaccatgcaaacggactgacgaaaacc
gctggctccggcaccttctccaacagtaaacccggtgcagccaagaaactagtcatcaag
aacttcaaagaaaagcccaagttgcctgagaactacacacaggagacctggcagaagctg
aaggaggcagtggaggccatacagaacagcacttcaatcaagtacaatctagaggagctc
taccaggctgtcgagaacctgtgctcccataagatatctgccaagctttacaaacagctg
agggccgtgtgtgaagaccacatcaaggcacagattgatcagttcagagaggatgccctg
gacagtgtgcttttcctcaagaaaattgacaagtgctggcaagatcactgcagacaaatg
atcatgattaggagtatatttttgtttttggaccgcacctatgttttacaaaattcaatg
ctgccatcaatctgggacatgggtctggagctgttcaggttctacatcatcagtgatctg
aaggtccagagtaaaaccatcgatgggattctgctgctcattgagagggagcgaaacgga
gaggcgattgaccgcagcctgctgaggagcctgctgagcatgctctctgacctgcagatt
tatcaagactcctttgagcagcgctttttggaggaaactaatcgcctgtacgctgcagag
ggacagaggctgatgcaggagagagaggtgccagaatatctccatcatgtcaacaaacgg
ttggaggaggaggcagacagagtcatcacgtatctagaccagagcacacaaaaaccactc
attgccactgtggagaagcagctgctgggtgaacacctcagtgcgactctgcagaaagga
ctgactcacttgctggacgagaacagaatccaggatctgtctcttctctatcagctcttt
agtcgagtgcggggtggtgttcaggtcctcctgcaacactggatagagtacataaaggct
tttggaagcacaattgtaatcaatccagaaaaagacaaaacaatggtgcaggagttgctg
gacttcaaagacaaggtggatcacatcatcgacgtctgcttcatgaagaacgagaagttt
gtcaacgccatgaaggaggctttcgaaacattcatcaacaaacggccaaataaacctgca
gagctcatagcaaaacatgtggattcaaagctaagggcaggaaacaaagaggcaacagat
gaagaactagagaagatgctggataagatcatgattatctttaggttcatctatggaaaa
gacgtttttgaggcattttacaagaaggatctggccaagaggttgctggttggaaaaagt
gcttctgttgatgctgaaaaatcaatgttgtcaaagctgaaacatgaatgtggagcagcg
ttcaccagcaaactggaaggaatgttcaaggatatggagctttctaaagacatcatggta
cagttcaaacagtatatgcagtgccaaaacattcctggcaacattgagctgacggtcaac
atcctcactatgggttactggccaacctatgtcccaatggaagtgcacctgcctcccgag
atggtgcgactgcaagagatcttcaagaccttctacctgggcaaacacagcggcaggaag
ctgcagtggcaatcaacactaggccattgtgtcttaaaagctgaatttaaggagggcaag
aaggagctgcaggtgtcacttttccaaacacttgtgctactgatgtttaatgagggagag
gagttcaccctggaggagatcaaactggcaacaggaatagaggacagtgaactgcgccgg
actctgcagtcgctcgcttgtggaaaagcacgagtcctcaccaaaatcccaaaaagcaaa
gatgtggaggacggggacaagttctcctgcaacgatgacttcaaacacaaactcttcagg
atcaaaattaaccagatccagatgaaagaaacggtggaggagcaagccagtaccacagaa
agggtctttcaggatcgtcagtatcagatcgatgctgccatagtgcggatcatgaagatg
aggaagactctgagccataatctcttgatgtctgaggtgtacaaccagctcaagttccct
gtcaagcctgctgacttgaagaagaggatagagtctcttattgacagggactatatggag
cgtgacaaggagaaccccaaccaatacaactatgtggcttaa
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