Lates calcarifer (barramundi perch): 108895438
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Entry
108895438 CDS
T04895
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108895438
03041 Spliceosome [BR:
lcf03041
]
108895438
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108895438
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108895438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
Nup35_RRM
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108895438
NCBI-ProteinID:
XP_018549785
UniProt:
A0A4W6CWE5
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Position
LG9:complement(18175875..18188001)
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AA seq
385 aa
AA seq
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MDDDQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDPYCFVEFYEHRHAT
ATIAAMNGRKILGKEVKVNWATTPTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPFGK
ISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTA
SETTNTKQLSFDEVVNQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVFPDKGY
SFVRFNSHEAAAHAIVSVNGTSIEGYVVKCYWGKETTDMVSPIQQVQMPQQNTVSFAAQP
YSQWGQWYSNTQQIGQYVPNGWQVPSYGVYGQTWDQQGYNHLHAGAGWTGVGAVSNGGMV
EPGQGVNGTMLTNQAGMSTAGYHTH
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgaccagcccaaaaccctgtatgtggggaatctgtcccgggacgtgacagag
gccctcatcttggagttgtttggccagattggaccctgcaaaagctgtaaaatgatagta
gatacagcaggtcatgatccgtactgctttgtggagttctatgagcatagacatgccact
gccacaattgcagccatgaatggtcggaaaatactgggtaaggaggtcaaggtcaactgg
gccacgacgccaaccagccaaaagaaagacacaagcagtcacttccatgtctttgttggg
gatctaagtcctgaaattaccacagatgacataaaagcagcctttgctccatttgggaaa
atatcggactgtcgagtggtgaaagacatggccacaggtaaatctaaaggctatggcttt
gtctccttcttcaacaaatgggatgctgagaatgccatacagcagatgggaggacagtgg
ttgggaggaaggcaaatcaggaccaactgggccacaaggaagcctgctcctaaaactgca
agtgaaacaaccaataccaagcaactgtcgtttgatgaggtggtgaatcagtccagcccc
agcaactgcaccgtctactgtggaggagtcacaacaggtctcacagagcaaattatgaga
cagaccttctcaccgttcggccaaataatggaaatccgtgttttcccagacaaaggctac
tcatttgtgaggttcaactcccatgaagcagcagctcatgccattgtttctgtcaatggc
acatccatagagggctatgttgttaagtgttactggggcaaagaaacaacagacatggtt
agccccattcagcaggtacagatgccacagcagaacacggtgagcttcgcagcgcagccc
tacagtcagtggggtcagtggtacagtaacacgcagcagattggtcagtatgtgcccaat
ggatggcaagtaccaagctatggagtctatggacagacctgggatcagcagggctacaat
catttacatgccggtgctggatggacaggagtgggcgccgtgagcaacggcggcatggtg
gagcccgggcagggagtcaacgggacgatgctaaccaaccaggctggcatgagcactgct
ggctaccacacccactga
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