Lates calcarifer (barramundi perch): 108895463
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Entry
108895463 CDS
T04895
Symbol
otpa
Name
(RefSeq) orthopedia homeobox a
KO
K24901
homeobox protein orthopedia
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108895463 (otpa)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
108895463 (otpa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
Sporozoite_P67
CDK2AP
Motif
Other DBs
NCBI-GeneID:
108895463
NCBI-ProteinID:
XP_018549820
UniProt:
A0AAJ7Q8Y3
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Position
LG9:18552417..18557673
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AA seq
324 aa
AA seq
DB search
MLSHADLLDARLGMKDAAAELLGHREALKCRLGGGGPDPGHSGELGPGPDGVEGATMLPG
DDISSGGGSNAVQVNSKEQEKQQQQQQQQNNNNNPNQSGGQQTQKQKRHRTRFTPAQLNE
LERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPT
HHGLPQFPSAAAAAAAMGDSLCSFHANDTRWATAGMPGVSQLQLPPALGRQQAMAQSLSQ
CSLGAGPPPNSMGLSNMSSNGSGLQSHLYQPTFPGMVPASLSGPTNVTGSPQLCSSPDSD
VWRGTSIASLRRKALEHTVSMSFT
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgctatctcatgccgacctcctggatgctcgcctcgggatgaaggatgccgcggcggag
ctcctgggccacagggaggctttaaagtgcaggctcggcggagggggacctgacccggga
cactccggggagctcggcccgggcccggacggcgtggaaggggccacgatgctcccgggc
gatgatatcagcagcggcggcggatccaacgcggtgcaggtcaacagcaaagagcaggag
aagcagcagcaacagcagcagcaacaaaacaacaacaacaacccaaaccagtcgggaggg
cagcagacccagaaacagaagcggcaccggacccgcttcaccccggcgcagctcaacgag
ctggagaggagcttcgccaaaacgcactacccagatatcttcatgcgggaggagctggct
ctgaggatcggtctgacggagtccagagtgcaggtctggtttcagaaccgacgcgccaag
tggaagaagcgcaagaagaccaccaacgtcttccgggctccggggactctcctgccgacg
caccacggcctgccccagttcccgtccgccgcggcggcagcggcggccatgggcgacagc
ctctgctccttccacgccaacgacacccgctgggccacggcagggatgcccggcgtgtct
cagctgcagctaccgccggctctgggccgccagcaggccatggcccagtccctgtctcag
tgcagcctcggcgccgggccgccgcccaactccatgggtctatccaacatgtcgtcaaac
ggctccgggctgcagtcgcacctctaccagcccacgttccccgggatggtacccgcgtcc
ctatccggcccgaccaacgtgaccggctcgcctcagctgtgtagctccccggacagtgac
gtctggagagggacaagcatcgcctcgctgcgccgcaaagcgctggagcacacagtatcc
atgagtttcacctag
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