Lates calcarifer (barramundi perch): 108895698
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Entry
108895698 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: LIM domain-binding protein 3-like
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108895698
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108895698
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
108895698
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
zf-C3HC4_3
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108895698
NCBI-ProteinID:
XP_050932528
UniProt:
A0AAJ8BIZ9
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Position
LG16_LG22:22759400..22808261
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AA seq
551 aa
AA seq
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MSTYTVSLPGPGPWGFRLQGGKDFNMPLTISRISPGSKAAQGNLIQGDVIVAIDGVSTDG
MTHLEAQNKIKMANYNLALTMSKSKRPIPMPPPRMDATISMIPHQQVFSPAAPNAGFNPN
VLKDTALSTHKPIEVKGPGGKATIIHAQYNTPISMYSQDAIMDAIAGQTQAKGHDASLKR
QSAAGYSFQHKAAVSSQYAQPPAMHQAPQAPPPQQYQPMPQQYHQPPMQHAPPTQQSSIQ
IPLGSAPPKVVSTACIYPSQPAPAPAPVPQPRPPAAAPAPPPPAGASSNRPPWVTDTNFA
DKFDPSKTTTTTMKVQPLPQAAPPPPAYIPNPSPAAPPVPSPAPITPSPAPFSPVARGVA
QRAERFAASSRTPLCGACNSVIRGPFLVALGRSWHPEEFNCHYCHMSLADVSFVEEQNNV
YCENCYEEFFAPTCARCNTKIMGEVMHALRQTWHTTCFVCAACGKAFGNSLFHMEDGEPY
CEKDYIALFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFVCAVCHVNLEGQPFYSKKDKP
LCKKHAHAINV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctacactgtatcgctgcccggccccggcccctggggcttcagactgcagggg
ggcaaggacttcaacatgccactcaccatctccaggatctctccgggcagcaaggcagca
cagggtaatctgatccagggtgatgttatcgtcgccattgatggtgtcagcactgacggg
atgactcacctggaggcccagaacaagatcaagatggccaactacaacctggcgctcacc
atgtccaagtcaaagcgtcccattccaatgccaccaccaagaatggatgccactatttcc
atgatccctcaccaacaggttttctctcctgctgctcccaacgccggcttcaaccccaac
gtgctgaaggacactgccctctccacccacaagcccatagaagtgaagggccccggtggt
aaggccaccatcatccacgcccagtacaacacacccatcagcatgtactcgcaggacgcc
atcatggacgccatcgcgggacagacgcaggctaaggggcacgacgccagcctgaagcga
cagtctgccgctggttacagcttccagcacaaagctgcagtctccagccagtacgctcag
cctcctgccatgcatcaggctccacaggccccacccccacagcagtaccagccaatgcca
cagcagtaccatcagccccccatgcaacacgccccaccaactcagcagagctccattcag
atccctcttggctccgcccctcccaaagtggtcagcaccgcctgcatatacccctcccag
cctgctccagcaccagctccagttcctcagccccgccctccagccgccgccccagcccca
cctccacctgctggtgcctcctccaacagacccccctgggtgaccgacaccaacttcgcc
gataagttcgacccgagtaagaccaccaccaccaccatgaaggtgcagccgctgccccag
gctgcccctcctccaccagcttacatccccaacccctcccctgctgcacctcctgttccc
agccccgcccccattacccccagccctgcccctttctctccagtggcgaggggtgtggct
cagagggcggagaggttcgccgccagcagccgtacacccttgtgtggggcctgcaacagt
gtcatcaggggccccttcctggtggccctcggccggtcctggcaccccgaggagttcaac
tgtcactactgccacatgtctctggctgatgttagctttgtggaggaacagaacaacgtt
tactgtgagaactgctacgaggagttcttcgccccgacctgtgcccgctgcaacaccaag
atcatgggggaagtgatgcacgctctgcggcagacgtggcacaccacctgcttcgtgtgc
gcagcctgtggcaaagctttcggaaacagcctcttccacatggaggatggagagccatac
tgtgagaaagattatattgcactcttcagtacaaagtgtcatggctgtgacttcccagtt
gaagctggtgataagttcatcgaggctctaggtcacacctggcatgacacctgctttgtc
tgtgcggtttgccatgtgaacctggagggccagcctttctactcaaagaaagacaagcct
ctgtgtaagaagcatgctcacgccatcaatgtgtaa
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