Lates calcarifer (barramundi perch): 108895727
Help
Entry
108895727 CDS
T04895
Symbol
xpo1b
Name
(RefSeq) exportin-1 isoform X1
KO
K14290
exportin-1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03008
Ribosome biogenesis in eukaryotes
lcf03013
Nucleocytoplasmic transport
lcf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108895727 (xpo1b)
03008 Ribosome biogenesis in eukaryotes
108895727 (xpo1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108895727 (xpo1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108895727 (xpo1b)
03009 Ribosome biogenesis [BR:
lcf03009
]
108895727 (xpo1b)
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108895727 (xpo1b)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108895727 (xpo1b)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108895727 (xpo1b)
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
108895727 (xpo1b)
Pre-60S particles
108895727 (xpo1b)
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
108895727 (xpo1b)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108895727 (xpo1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
mTOR_dom
TPR_TNPO3_IPO13_2nd
BID
BspA_v
Motif
Other DBs
NCBI-GeneID:
108895727
NCBI-ProteinID:
XP_018550136
UniProt:
A0AAJ7Q9F9
LinkDB
All DBs
Position
LG16_LG22:complement(23540412..23565721)
Genome browser
AA seq
1074 aa
AA seq
DB search
MPAVMTMLADHAAQQLLDFNQKLDINLLDNVVNCLYHGVGPQQRMAQEVLTHLKEHPDAW
TRVDTILEFSQNMNTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDASNV
EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVSQYEEQFVTLFTLTMCQLKQMLPL
NTNIRLAYANGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGNQHFDVPPRRQLYLPVLSKVRLLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFI
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEKYMLL
PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV
YKCLSENISAAIQTNGKGGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFV
PPLLDAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITSEIPQIFDAVFECTLNMINKN
FEEYPEHRTHFFYLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQIL
YTMLQNVAQEETAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGK
ITTGLNPASPTNNQVFIQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRD
FLVQIKEFAGEDTSDLFLEEREASLRQAQEEKHKIQMSVPGILNPHEIPEEMCD
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagttatgacaatgttagcagaccatgcagcacagcagctgctggacttcaac
cagaaactggatatcaatctgctggataatgtggtgaactgtctttatcatggggtggga
ccacagcaaagaatggcacaagaagtgttgacacacttaaaagagcatccggatgcctgg
acgagagtggacaccatcctcgaattctcccagaacatgaacactaaatactatgctctt
cagattctggaaacggttatcaaaacaagatggaagattcttcccaggaatcagtgtgaa
ggtataaaaaagtatgttgttggtctcattatcaagacttcatcagacgcatcaaatgtg
gagaaagaaaaggtgtacattgggaagctgaacatgatccttgttcagatcctgaagcag
gagtggcccaaacactggcccaccttcatcagtgacattgtgggggcaagtcgcaccagt
gagagcctttgtcagaacaacatggtcattctgaagctgctcagcgaagaggtctttgac
ttctccagcggccagatgacccaggtcaaggccaagcacctaaaagacagcatgtgcaac
gaattctcccagatattccagctttgccagtttgttatggaaaattcccagaatgcccct
ctggttcacgccactctggagaccctcctacgttttctcaactggattcctcttggctac
atcttcgaaaccaaactgatcagcacattggtgtataagttcttgaacgtgcccatgttc
cgcaatgtgacactgaagtgcctgacagagatcgctggtgtcagtgtcagccagtatgag
gagcagtttgtcacactcttcacactgaccatgtgtcagctcaaacagatgctgcctctg
aacaccaacattcggctggcctacgccaacgggaaagatgacgagcagaacttcatccag
aatcttagtctgttcctttgtactttcctgaaggagcacgggcagctcattgagaaacgg
ctcaacctcagagaaacattaatggaagcccttcactacatgctgctggtgtcagaggtg
gaagagactgagatctttaaaatttgcttggagtattggaaccacttggctgctgagctc
tacagagagagtcccttctcaacatccacatcccctctgctctctggcaaccagcacttt
gacgtgcctccgcgcagacagctctatctgcctgtgctctccaaggtgcgtctgctgatg
gttagtaggatggccaagccagaggaggtactggtggtggaaaatgaccagggggaggtg
gtcagagagtttatgaaggacacagattccatcaacctctacaagaacatgagggaaacc
cttgtgtatctcactcacttggactacgcagacacagaacgcataatgacagagaagctt
cacaaccaggtgaatggaactgaatggtcctggaagaaccttaatacattgtgctgggcc
attggatctatcagtggggcaatgcatgaggaggacgagaagaggttcctggtcactgtc
atcaaggatctgctgggtctgtgtgagcagaagagaggaaaggacaacaaggccatcata
gcctccaacatcatgtatatcgttggccagtatccacgctttctcagagcccactggaag
ttcctcaaaactgtggtcaacaagctctttgagttcatgcatgagacccatgatggagtt
caggatatggcctgtgacacattcatcaaaattgcccagaagtgccggcgccactttatc
caggtgcaggtgggagaagtgatgcccttcatcgacgagatcctcaacaacattaacacc
atcatctgtgacctccaaccacaacaggttcacacattttatgaggcagtaggttatatg
attggggcccagacagatcaggctgttcaggagcacctcatagagaaatatatgctgctg
cctaatcaagtgtgggacagcatcatccagcaggccactaagaacgtggacattttgaaa
gacccagagactgtgaagcagctgggcagcatcctgaagaccaacgtcagagcctgcaag
gccgtgggacacccatttgtcatccagctgggacggatttaccttgacatgctcaacgtc
tacaagtgcctcagtgagaacatctctgccgccattcagacaaatggtaagggaggtgag
atggtgacaaaacaacccttgatccgaagtatgaggacagtgaaacgagagacgctgaaa
ctgatctcaggctgggtcagccgatcaaacgacccacagatggttggggagaactttgtt
ccaccgctactggacgccgtcctcatcgactaccagcgcaacgtccccgctgcccgagaa
cccgaggtcctcagcaccatggcaaccattgtcaacaagcttgggggacacatcaccagc
gagataccccagatctttgatgcagtctttgagtgcaccctaaacatgatcaacaagaac
tttgaggagtatccagagcacaggacccacttcttctacttgctccaagctgtaaactct
cactgcttccctgcattcctcgccatccccccagcccagtttaaactggtgctggactcc
atcatctgggccttcaaacacaccatgaggaacgtggctgacactggtctgcagattctc
tacacgatgctgcaaaacgtggcgcaggaggaaacggccgctcagagtttctaccagacg
tatttctgtgatatactgcaacacatcttctctgtggtcacagacacatcgcacactgcc
ggcctgaccatgcacgcgtccatcctggcctacatgttcaacctggtggaagaggggaag
atcaccacgggcctgaaccctgccagccccaccaacaaccaggtgttcatccaggagtat
gtggccaacctgctcaagaccgccttccctcatctacaagatgctcaggtgaaggtgttt
gtgactgggctgttcagcttaaaccaggacattcccgccttcaaggagcaccttagggac
ttcctcgtccagataaaggagtttgcaggtgaggacacctcagacctgttcctcgaggag
agggaggcatcactccgtcaggcccaggaggagaaacataagatccagatgtcggtccca
ggcatcctcaaccctcacgagatccctgaggagatgtgtgactga
DBGET
integrated database retrieval system