KEGG   Lates calcarifer (barramundi perch): 108895727
Entry
108895727         CDS       T04895                                 
Symbol
xpo1b
Name
(RefSeq) exportin-1 isoform X1
  KO
K14290  exportin-1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03008  Ribosome biogenesis in eukaryotes
lcf03013  Nucleocytoplasmic transport
lcf03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108895727 (xpo1b)
   03008 Ribosome biogenesis in eukaryotes
    108895727 (xpo1b)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    108895727 (xpo1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108895727 (xpo1b)
   03009 Ribosome biogenesis [BR:lcf03009]
    108895727 (xpo1b)
   03016 Transfer RNA biogenesis [BR:lcf03016]
    108895727 (xpo1b)
   03036 Chromosome and associated proteins [BR:lcf03036]
    108895727 (xpo1b)
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     108895727 (xpo1b)
Ribosome biogenesis [BR:lcf03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    108895727 (xpo1b)
  Pre-60S particles
    108895727 (xpo1b)
Transfer RNA biogenesis [BR:lcf03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    108895727 (xpo1b)
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     108895727 (xpo1b)
SSDB
Motif
Pfam: CRM1_C Xpo1 CRM1_repeat_2 CRM1_repeat_3 CRM1_repeat IBN_N mTOR_dom TPR_TNPO3_IPO13_2nd BID BspA_v
Other DBs
NCBI-GeneID: 108895727
NCBI-ProteinID: XP_018550136
UniProt: A0AAJ7Q9F9
LinkDB
Position
LG16_LG22:complement(23540412..23565721)
AA seq 1074 aa
MPAVMTMLADHAAQQLLDFNQKLDINLLDNVVNCLYHGVGPQQRMAQEVLTHLKEHPDAW
TRVDTILEFSQNMNTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDASNV
EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVSQYEEQFVTLFTLTMCQLKQMLPL
NTNIRLAYANGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGNQHFDVPPRRQLYLPVLSKVRLLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFI
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEKYMLL
PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV
YKCLSENISAAIQTNGKGGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFV
PPLLDAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITSEIPQIFDAVFECTLNMINKN
FEEYPEHRTHFFYLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQIL
YTMLQNVAQEETAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGK
ITTGLNPASPTNNQVFIQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRD
FLVQIKEFAGEDTSDLFLEEREASLRQAQEEKHKIQMSVPGILNPHEIPEEMCD
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgccagcagttatgacaatgttagcagaccatgcagcacagcagctgctggacttcaac
cagaaactggatatcaatctgctggataatgtggtgaactgtctttatcatggggtggga
ccacagcaaagaatggcacaagaagtgttgacacacttaaaagagcatccggatgcctgg
acgagagtggacaccatcctcgaattctcccagaacatgaacactaaatactatgctctt
cagattctggaaacggttatcaaaacaagatggaagattcttcccaggaatcagtgtgaa
ggtataaaaaagtatgttgttggtctcattatcaagacttcatcagacgcatcaaatgtg
gagaaagaaaaggtgtacattgggaagctgaacatgatccttgttcagatcctgaagcag
gagtggcccaaacactggcccaccttcatcagtgacattgtgggggcaagtcgcaccagt
gagagcctttgtcagaacaacatggtcattctgaagctgctcagcgaagaggtctttgac
ttctccagcggccagatgacccaggtcaaggccaagcacctaaaagacagcatgtgcaac
gaattctcccagatattccagctttgccagtttgttatggaaaattcccagaatgcccct
ctggttcacgccactctggagaccctcctacgttttctcaactggattcctcttggctac
atcttcgaaaccaaactgatcagcacattggtgtataagttcttgaacgtgcccatgttc
cgcaatgtgacactgaagtgcctgacagagatcgctggtgtcagtgtcagccagtatgag
gagcagtttgtcacactcttcacactgaccatgtgtcagctcaaacagatgctgcctctg
aacaccaacattcggctggcctacgccaacgggaaagatgacgagcagaacttcatccag
aatcttagtctgttcctttgtactttcctgaaggagcacgggcagctcattgagaaacgg
ctcaacctcagagaaacattaatggaagcccttcactacatgctgctggtgtcagaggtg
gaagagactgagatctttaaaatttgcttggagtattggaaccacttggctgctgagctc
tacagagagagtcccttctcaacatccacatcccctctgctctctggcaaccagcacttt
gacgtgcctccgcgcagacagctctatctgcctgtgctctccaaggtgcgtctgctgatg
gttagtaggatggccaagccagaggaggtactggtggtggaaaatgaccagggggaggtg
gtcagagagtttatgaaggacacagattccatcaacctctacaagaacatgagggaaacc
cttgtgtatctcactcacttggactacgcagacacagaacgcataatgacagagaagctt
cacaaccaggtgaatggaactgaatggtcctggaagaaccttaatacattgtgctgggcc
attggatctatcagtggggcaatgcatgaggaggacgagaagaggttcctggtcactgtc
atcaaggatctgctgggtctgtgtgagcagaagagaggaaaggacaacaaggccatcata
gcctccaacatcatgtatatcgttggccagtatccacgctttctcagagcccactggaag
ttcctcaaaactgtggtcaacaagctctttgagttcatgcatgagacccatgatggagtt
caggatatggcctgtgacacattcatcaaaattgcccagaagtgccggcgccactttatc
caggtgcaggtgggagaagtgatgcccttcatcgacgagatcctcaacaacattaacacc
atcatctgtgacctccaaccacaacaggttcacacattttatgaggcagtaggttatatg
attggggcccagacagatcaggctgttcaggagcacctcatagagaaatatatgctgctg
cctaatcaagtgtgggacagcatcatccagcaggccactaagaacgtggacattttgaaa
gacccagagactgtgaagcagctgggcagcatcctgaagaccaacgtcagagcctgcaag
gccgtgggacacccatttgtcatccagctgggacggatttaccttgacatgctcaacgtc
tacaagtgcctcagtgagaacatctctgccgccattcagacaaatggtaagggaggtgag
atggtgacaaaacaacccttgatccgaagtatgaggacagtgaaacgagagacgctgaaa
ctgatctcaggctgggtcagccgatcaaacgacccacagatggttggggagaactttgtt
ccaccgctactggacgccgtcctcatcgactaccagcgcaacgtccccgctgcccgagaa
cccgaggtcctcagcaccatggcaaccattgtcaacaagcttgggggacacatcaccagc
gagataccccagatctttgatgcagtctttgagtgcaccctaaacatgatcaacaagaac
tttgaggagtatccagagcacaggacccacttcttctacttgctccaagctgtaaactct
cactgcttccctgcattcctcgccatccccccagcccagtttaaactggtgctggactcc
atcatctgggccttcaaacacaccatgaggaacgtggctgacactggtctgcagattctc
tacacgatgctgcaaaacgtggcgcaggaggaaacggccgctcagagtttctaccagacg
tatttctgtgatatactgcaacacatcttctctgtggtcacagacacatcgcacactgcc
ggcctgaccatgcacgcgtccatcctggcctacatgttcaacctggtggaagaggggaag
atcaccacgggcctgaaccctgccagccccaccaacaaccaggtgttcatccaggagtat
gtggccaacctgctcaagaccgccttccctcatctacaagatgctcaggtgaaggtgttt
gtgactgggctgttcagcttaaaccaggacattcccgccttcaaggagcaccttagggac
ttcctcgtccagataaaggagtttgcaggtgaggacacctcagacctgttcctcgaggag
agggaggcatcactccgtcaggcccaggaggagaaacataagatccagatgtcggtccca
ggcatcctcaaccctcacgagatccctgaggagatgtgtgactga

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