Lates calcarifer (barramundi perch): 108895764
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Entry
108895764 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin Fat 4-like
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04371
Apelin signaling pathway
lcf04514
Cell adhesion molecules
lcf04520
Adherens junction
lcf05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
108895764
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108895764
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108895764
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
108895764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108895764
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108895764
04090 CD molecules [BR:
lcf04090
]
108895764
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
108895764
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Major cadherins
108895764
CD molecules [BR:
lcf04090
]
Proteins
108895764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Motif
Other DBs
NCBI-GeneID:
108895764
NCBI-ProteinID:
XP_018550189
UniProt:
A0AAJ7VEW7
LinkDB
All DBs
Position
LG16_LG22:complement(25679592..25757759)
Genome browser
AA seq
1884 aa
AA seq
DB search
MGTARFVVIAISIVIFQASASLTAKEPTCASGFESDMFIFKVNRNQLRQGARLGRVVFTD
CTPRTRFLFHSDDSRFMVQPDGELKVKRHVVLHKGHLDLVINSWDSQGRKMSVPVRILYH
RHYHEKNHGGHHGDHHENHHQNVEHHHGDHRHHNHQHILTEADSANNTEVPVQQFPKTSD
GLRRRRKRDWIIPDIKVSENDRGPYPLKVSQIRSNEDKVKKIFYSITGPGADQPPVGRFT
MDRDTGILYVTQPLDREEVAKYMFQAHAVAEGSGNVEEIMDIVVIVIDQNDNKPVFTQDT
YLGEVPEASPKGHEVITVKATDDDEPNSDNSDVRYRILSQTPQFPSDNLFVINPVTGVIR
VNDDGLDREKYPKYTLVVEAADMQGEGLSGQAKVNLTVTDSNNNASAFTQSSVPVQQFPK
TSDGLRRRRKRDWIIPDIKVSENDRGPYPLKVSQIRSNEDKVKKIFYSITGPGADQPPVG
RFTMDRDTGILYVTQPLDREEVAKYMFQAHAVAEGSGNVEEIMDIVVIVIDQNDNKPVFT
QDTYLGEVPEASPKGHEVITVKATDDDEPNSDNSDVRYRILSQTPQFPSDNLFVINPVTG
VIRVNDDGLDREKYPKYTLVVEAADMQGEGLSGQAKVNLTVTDSNNNASAFTQSSVPVQQ
FPKTSDGLRRRRKRDWIIPDIKVSENDRGPYPLKVSQIRSNEDKVKKIFYSITGPGADQP
PVGRFTMDRDTGILYVTQPLDREEVAKYMFQAHAVAEGSGNVEEIMDIVVIVIDQNDNKP
VFTQDTYLGEVPEASPKGHEVITVKATDDDEPNSDNSDVRYRILSQTPQFPSDNLFVINP
VTGVIRVNDDGLDREKYPKYTLVVEAADMQGEGLSGQAKVNLTVTDSNNNASAFTQSSVP
VQQFPKTSDGLRRRRKRDWIIPDIKVSENDRGPYPLKVSQIRSNEDKIKKIFYSITGPGA
DQPPVGLFTMDRDTGILYVTQPLDREEVARYMFQAHAVADSSGNAEEPMDIVVIVIDQND
NKPVFTQDTYLGEVPEASPKGYEVITVKATDNDEPNSDNSDVRYRILSQTPQFPSDNLFE
INPVTGVIRVNDGGLDREKYPKYTLVVEAADMVGEGLSGEAKVILTVTDSNDNAPTFTQS
SVPVLQFPKTGDGLRRRKRDWVIPDLKVSENARGPYPLKVSQIRSNEDKVKKIFYSITGP
GADQPPVGLFTMDRDTGILYVTQPLDREEVARYMFQAHAVAEGSGNAEEPMDIVVIVIDQ
NDNKPVFTQDTYLGEVPEASPKGYEVITVKATDDDEPNSDNSDVRYLILSQTPQFPSDNL
FEINPVTGVIRVNNSGLDREKYPKYTLVVKAADMVGSGLSGEAKVILTVTDSNDNAPAFT
QSSYEATVAENKVDAVVITMSVTDGDEPHSPAWNAKFKIVDGDPGGLFNVKTGQNKHDGI
ITTAKGLDFEKSSKHTLLVAVENEVPFATPLPTATATVVVNVQDVNEAPIFDPVEKYVSK
REDLPINTDVVQYTASDPDTARKQTVKYKIISDPAGWLIVAKDTGLIKVKNSMDRESHFV
KDDKYTALIGAYDNDDVPATGTGTLIIQLEDVNDNAPIIEERVIKVCNKESAPQLLSVTD
KDGPGFAAPYTVSLEGMSKTNWTARMNATQTGIILKLATELASGDYTVVLRVRDTQGLEQ
DNTVQATVCDCKGEEVSCQGRIAGGTGLPVILGILGGILLLLMLVLLLLLFARRRKGEIK
EPLLQDDDVRDNIYYYDEEGGGEDDQDYDLSVLHRGLDNRPEVFRNDVVPNFMPAPQYRP
RPANPEEIGNFIDDNLKAADNDPTAPPYDSLLVFDYEGGGSDAGSLSSLNSSSSGDQNYD
CLSEWGPRFKKLADMYGGGEDDML
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgctcggtttgtggttattgccatttcaatcgtgattttccaggcttcagct
tcactgactgctaaggagccaacatgtgcgtctggatttgagtcagatatgttcattttc
aaagtgaacaggaaccaactgaggcagggcgcaagactgggcagagtggtcttcaccgac
tgcacaccccgcacaagatttcttttccacagtgatgacagccgtttcatggtgcagcca
gatggcgaattgaaggtaaagagacacgtagttcttcacaaaggacacttggacttggtc
atcaactcctgggactcacaaggtcgcaaaatgagtgttccagtcaggatattgtaccat
aggcattaccatgagaaaaaccatgggggtcatcatggtgatcaccatgagaaccaccac
caaaatgttgaacatcaccatggagaccacagacaccacaaccatcagcacatccttact
gaagctgactctgctaataacacagaggtgcctgttcagcaattccccaagactagtgat
gggctgaggaggaggaggaagagagactggattattcctgacatcaaagtttctgagaat
gacagaggaccctatccccttaaagtatctcaaatccgttcaaatgaagataaagtaaag
aagatcttttacagcatcactggtccaggagctgatcaacctcctgtcggccgtttcacc
atggaccgagatactggtattctgtacgtcacacagccattggacagagaagaggtggcc
aagtacatgtttcaagcgcacgctgtggcagagggttcaggaaatgttgaggagatcatg
gatattgtagtaattgtgattgaccagaatgacaacaaacctgttttcactcaagacacc
tacctgggggaagtcccagaggcctcaccaaaaggtcatgaggtgataacagttaaggcc
acagatgatgacgagccaaattctgacaactcggatgtccgctaccgtattctgagccag
actccacagtttcccagtgacaacctgtttgtcatcaacccagtcactggagttatcaga
gtcaatgatgatgggctagatagagagaaatatccaaagtacactctggtggtagaggca
gcagacatgcagggagaagggctgtctggacaagccaaagtaaacctcactgtaacagat
agcaacaacaatgcttcagccttcactcagtcctctgtgcctgttcagcaattccccaag
actagtgatgggctgaggaggaggaggaagagagactggattattcctgacatcaaagtt
tctgagaatgacagaggaccctatccccttaaagtatctcaaatccgttcaaatgaagat
aaagtaaagaagatcttttacagcatcactggtccaggagctgatcaacctcctgtcggc
cgtttcaccatggaccgagatactggtattctgtatgtcacacagccattggacagagaa
gaggtggccaagtacatgtttcaagcgcacgctgtggcagagggttcaggaaatgttgag
gagatcatggatattgtagtaattgtgattgaccagaatgacaacaaacctgttttcact
caagacacctacctgggggaagtcccagaggcctcaccaaaaggtcatgaggtgataaca
gttaaggccacagatgatgacgagccaaattctgacaactcggatgtccgctaccgtatt
ctgagccagactccacagtttcccagtgacaacctgtttgtcatcaacccagtcactgga
gttatcagagtcaatgatgatgggctagatagagagaaatatccaaagtacactctggtg
gtagaggcagcagacatgcagggagaagggctgtctggacaagccaaagtaaacctcact
gtaacagatagcaacaacaatgcttcagccttcactcagtcctctgtgcctgttcagcaa
ttccccaagactagtgatgggctgaggaggaggaggaagagagactggattattcctgac
atcaaagtttctgagaatgacagaggaccctatccccttaaagtatctcaaatccgttca
aatgaagataaagtaaagaagatcttttacagcatcactggtccaggagctgatcaacct
cctgtcggccgtttcaccatggaccgagatactggtattctgtatgtcacacagccattg
gacagagaagaggtggccaagtacatgtttcaagcgcacgctgtggcagagggttcagga
aatgttgaggagatcatggatattgtagtaattgtgattgaccagaatgacaacaaacct
gttttcactcaagacacctacctgggggaagtcccagaggcctcaccaaaaggtcatgag
gtgataacagttaaggccacagatgatgacgagccaaattctgacaactcggatgtccgc
taccgtattctgagccagactccacagtttcccagtgacaacctgtttgtcatcaaccca
gtcactggagttatcagagtcaatgatgatgggctagatagagagaaatatccaaagtac
actctggtggtagaggcagcagacatgcagggagaagggctgtctggacaagccaaagta
aacctcactgtaacagatagcaacaacaatgcttcagccttcactcagtcctctgtgcct
gttcagcaattccccaagactagtgatgggctgaggaggaggaggaagagagactggatt
attcctgacatcaaagtttctgagaatgacagaggaccctatccccttaaagtatctcaa
atccgttcaaatgaagataaaataaagaagatcttttacagcatcactggtccaggagct
gatcagcctcctgttggccttttcaccatggaccgagatactggtattctgtatgtcaca
cagccattggacagagaagaggtggccaggtacatgtttcaagcgcacgctgtggcagac
agttcaggaaatgctgaggaacctatggatattgtagtaattgtgattgaccagaatgac
aacaaacctgttttcactcaagacacctacctgggggaagtcccagaggcctcaccaaaa
ggttatgaggtgataacagttaaggccacagataatgacgaaccaaatagtgacaactcg
gatgtccgctaccgtattctgagccagactccacagtttcccagtgacaacctgtttgaa
atcaacccagtcactggagtcatcagagtcaatgatggtgggctagatagagagaaatat
ccaaagtacactctggtggtagaggcagcagatatggtgggagaggggctgtctggagaa
gccaaagtaatcctcactgtaacagatagcaatgacaatgctccgaccttcactcagtcc
tctgtgcctgttctgcaattccccaagactggtgatgggctgaggaggaggaagagagac
tgggttattcctgacctcaaagtttctgagaatgccagaggaccctatccccttaaagta
tctcaaatccgttcaaatgaagataaagtaaagaagatcttttacagcatcactggtcca
ggagctgatcagcctcctgttggccttttcaccatggaccgagatactggtattctgtat
gtcacgcagccattggacagagaagaggtggccaggtacatgtttcaagcgcacgctgtg
gcagaaggttcaggaaatgctgaggagcctatggatattgtagtaattgtgattgaccag
aatgacaacaaacctgttttcactcaagacacctacctgggggaagttccagaggcctca
ccaaaaggttatgaggtgataacagttaaggccacagatgatgacgaaccaaatagtgac
aactcggatgtccgctacctgattctgagccagactccacagtttcccagtgacaacctg
tttgaaatcaacccagtcactggagtcatcagagtcaataatagtgggctagatagagag
aaatatccaaagtacactctggtggtaaaggcagcagacatggtgggaagtgggctgtct
ggagaagccaaagtaatcctcactgtaacagatagcaatgacaatgctccggccttcact
cagtcctcttatgaagcaacagtagcagaaaataaagtggacgctgtggtcattacgatg
tcagtaacagacggtgatgagccacattctccagcctggaacgccaagttcaagattgtt
gatggtgatcctggaggactgttcaatgtgaaaacaggacagaacaaacatgatggaatc
attactactgccaagggtcttgactttgaaaaaagcagcaagcacactctgttggttgca
gtggagaatgaggttcctttcgctactccactgcccactgctactgccacagtggtggtt
aacgtacaggatgtaaatgaagctccaatctttgatccagtggagaagtatgtgtcaaaa
cgggaggaccttcccatcaacactgatgtggtgcagtacactgcttctgacccagacacg
gcacgcaaacagaccgtcaagtataaaataattagtgaccctgcaggctggctaatcgtg
gccaaggacacaggcctgatcaaggtgaaaaacagcatggacagagaatcccatttcgtc
aaggatgacaaatatacagcactcattggtgcatatgacaatgatgacgtcccagccaca
ggaactggtactctgatcattcagcttgaagatgtcaacgacaatgcacccatcattgag
gaacgtgtaatcaaggtgtgtaacaaggaatcagctcctcagctgctgtcagtaacagat
aaagatggaccaggctttgctgcgccatacaccgtctctttagagggcatgtcgaagacc
aactggaccgctaggatgaacgccacccagaccggcatcatccttaaattagccactgag
ctggccagtggagactacactgtggtcctgagggtcagagacactcagggcctggagcag
gacaacactgtccaggccacagtgtgtgattgcaaaggggaagaagtgtcctgccaaggg
cgtattgcaggtggcaccggtctgcctgtaatcctgggaatcctgggaggcatcctgttg
ctgctcatgctggtgctgctgctgttgttgtttgcgagacggagaaaaggtgaaataaag
gagccactcctgcaggatgacgatgtcagagacaacatctactactatgatgaagaggga
ggaggagaggatgatcaggactatgatctgagtgttctccaccgtggtctggataaccgg
cctgaggtattcaggaacgatgtggtgccaaactttatgccagctcctcagtaccggcct
cgccccgccaacccagaggaaattggcaacttcattgatgataacctgaaggcagctgac
aacgacccaacagcgcccccctatgactccctgctggtgtttgactatgagggcggcggc
tctgacgcaggaagcctctcctctctgaactcgtcgagcagcggagaccagaactacgac
tgcctcagtgagtggggaccccgcttcaagaaactggccgacatgtacggaggaggagag
gatgatatgctgtaa
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integrated database retrieval system
