Lates calcarifer (barramundi perch): 108895791
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Entry
108895791 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: protein dispatched homolog 1
KO
K24680
protein dispatched 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108895791
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108895791
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Other domain-containing proteins
Patched domain-containing proteins
108895791
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMPL
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
108895791
NCBI-ProteinID:
XP_050927950
UniProt:
A0AAJ8B909
LinkDB
All DBs
Position
LG7_1:19133889..19219976
Genome browser
AA seq
1626 aa
AA seq
DB search
MALSDASGDPLALGNGGHHPLSSSGNAPANTATSVSNGQDPLTAACSSDCLTADGDEDVT
VKDAVLKVQQKQQRSLIVQRANRPSQNGGVVKQNGSLRNLPPSSAASPSLAITDSQRLAK
RHLPSTLSPSSSSSSSSTPLQPPPLCCQHCHFHSALCCPCGQQECPLFQNPGTGPGGPGS
VPHPGATSSCPCCLSACTYSHPHPHPPHPSSPLCLHHHHHQRWQEHLQSHAHATGISPAR
PFRFPKSYAELIADWPVVVLGVCTVLIVVCALVGVLVPDLPDFSDPLLGFEPRGTAIGQR
LVTWNNMVKNTGYKATLANYPFKYADEQAKNHQEPRWPEDHFDREKRQAEWDFSKEFFCD
VPGDSYSRLVFASAEGKNLWSIQAIKSMCNLDNTRVRSHRDYWSLCQRTNDASCCPSWTL
GNYIAVLTNRSSCQKITERDVSHTLKTLRSCAKYYHNGTLGPDCWDMALRRKDQLKCASV
PRKCTKYNAVYQILHFLVDKDFLSPKSLEHPPPVLKYSMLFSPTEKGESMMNIYLDNFEN
WNSSDGITTVTGIEFGIKHDLFQDYLLTDTVYPAIAIVIVLLVMCVYTRSVFITLMTIIA
IISSLIVSYFLYRMVFNFEFFPFMNLTALIILVGIGADDAFVLCDVWNYTKFDKPHAELA
ETVSVTLQHAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVNYILMVTWLPA
VVVLHERYLPNMFTCSKPPHQQRGYCTRMFWAGLCQKASKCLFTVSEASRIFFEKVLPCI
VIKLRYLWLFWFLAITVGGAYVVCVNPKMKLPSLELAEFQVFRSSHPFERYDAEYKKLFM
FERVHHGEDLHMPITIIWGVTPVDNGDPLNPKNKGKLMLDNSFNISSPASQLWILNFCQK
LRNQSFVFQSEEQDFTSCFIETFKQWMENQDCAEGSVYPCCSQSTFPYRPDVFELCIKRA
IMELDRSTNYHLDSKTPGPRFDINDTIRAIVLEFQSTYLFTLAYEKMYQFYLEVDAWITE
ELRFAPAGLSHGWFVSNLEFYDLQDSLSDGTLVAMALSVAVAFSVMLLTTWNVIISLYAI
LSIAGTIFVTVGSLVLLGWELNVLESVTISVAVGLSVDFAVHYGVAYRLAPEPDREGKVI
FSLSRMGSAIAMAALTTFVAGAMMMPSTVLAYTQLGTFMMLIMCISWAFATFFFQCMCRC
LGPQGTCGQIPLPKKLQCQAFSEATSTSPSSQGKGSGQAKYQLDSRGGQVEHYELEPLAS
SQKTEEKPREEHEVCTQLYNGIPPHHHTAPYSHIHYKSKPESGRAGPENGLVATLSTPSR
CQYSQNTNCTCGDPPPPHLPQQWTPHSCAQPPQDSTSCPPTPQLFPHSGNTPNKQNTSFL
PSNLDPVYTHMECRMHYIHCPPAHFHHCSQGRVAPRQGPAHSCHLRKYCVHTSNLQAGSG
REQRPTTPASNWDTGPASGPVSGSEPVGQEEDHRPEMSQASPGSSHNISNAAPTQPHTQC
PSPLLSSSHTTCHERQKARDRVHCCGDNHVSTTTTQTTTQMDACCKIPGNQEKLESIPVT
REQSVKKCKRTSKSERASSASPKKLYCFNRTLKVKCNSASDFNVPKSDTSVPPIAINTNP
SSESLC
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atggccctgagcgatgcgagcggcgaccccctggccctcggtaacggagggcaccatcct
ctcagttccagtggaaacgcccctgcaaacaccgctacatcagtcagcaatggccaggac
cctctcacagctgcctgcagtagtgactgcctcacagcggatggggatgaagatgttaca
gttaaggatgcagtgctgaaggtgcagcagaagcagcagagatcgctcatcgtccagaga
gcaaacaggccgagccaaaacggcggcgtggtcaaacagaacggctccctgaggaacctc
cccccatcctccgctgcctctccctccctcgctatcacagactcccagaggctggccaaa
cgccaccttccctccaccctttccccgtcttcctcctcctcctcctcctctactcctctc
cagccccccccactttgctgccagcactgtcacttccactctgccctctgctgcccctgt
ggacagcaggagtgcccgctctttcagaatccaggcaccggcccaggaggacctggctcg
gttccccacccgggggccacctcgtcctgcccctgctgcctctctgcctgcacgtactct
cacccacatccccatcctcctcacccatcctcccctctctgtcttcatcaccaccatcac
cagcgctggcaggagcacctccagagtcatgcacatgctactggaatcagccctgcaagg
ccctttcgattccccaaaagctatgctgagctgatagctgattggccagtggtggtgctg
ggggtgtgcacagtgctcattgtggtgtgtgctctggtgggcgtcctggtgcctgacctc
cctgatttctctgacccgctgctgggttttgagccacgtggaacagccattggtcagcga
ctggtcacatggaacaacatggtgaagaacacaggctacaaagccacactggccaactac
cccttcaaatatgctgacgagcaggccaaaaatcaccaagagcccaggtggcctgaagac
cactttgacagagagaaacgtcaagcagagtgggacttcagtaaagagttcttctgtgat
gtgccaggtgacagttactctagactggtgttcgcatctgctgaggggaagaacctgtgg
agtattcaggccatcaaatcaatgtgcaatctggacaacacaagggtgcgttcccaccgt
gactactggagcctttgtcagcgcaccaatgacgcctcctgttgtcccagctggacactc
ggcaactacatcgccgtcctcaccaacaggtcgtcctgccagaagatcactgagcgtgac
gtatcgcacacactcaagaccctgcgctcctgtgccaagtactaccacaacggcacactg
ggccccgactgctgggacatggccctgcgacggaaggaccagctcaagtgcgccagcgtg
ccccggaagtgcaccaagtataacgccgtctaccaaatccttcacttcctggtggacaag
gacttcctcagtcccaagagcctggagcatcctccgcctgtgctcaagtacagcatgctc
ttctcccccacagagaaaggagagtctatgatgaacatttacttggacaattttgagaac
tggaactcgtcggacggcatcaccacggttacagggattgagtttggcattaaacacgac
ctctttcaggactacctcctcacagacacagtctacccagccatagccatagtgatcgtt
ctgctggtcatgtgtgtgtacacgcgctcagttttcatcacgctaatgacgataatagcc
atcatcagctcactgattgtgtcttactttctctaccgaatggtcttcaactttgagttc
ttccccttcatgaaccttacggctcttatcatcctggttggtatcggcgcagatgacgcc
tttgtgctttgcgacgtgtggaactacaccaagtttgataaaccccatgctgagctggca
gagacagtcagtgtgaccctgcaacatgctgccctatctatgtttgtcaccagcttcacc
actgctgcagctttttatgccaactacgtcagcaacatcaccgccatacgctgctttggc
gtctatgctgggactgctattttggttaattacattctcatggtgacgtggctcccagct
gtggtggtgctccatgaacgctatctgcctaacatgttcacctgttccaagcctccacac
cagcagagaggttactgcacccggatgttctgggcaggtctttgccagaaggccagtaaa
tgcctatttactgtctctgaggcatccaggatcttctttgaaaaggtgctaccctgcatt
gtcatcaagctgcgctacctctggctcttctggttcctcgccatcacagtgggtggggcc
tacgtggtctgcgtcaacccaaagatgaagcttccatctctggagctggccgagtttcag
gtgttccgatcctctcacccgtttgaacgctatgacgcagagtacaagaagctgttcatg
ttcgagagggttcatcacggcgaggaccttcacatgccaataactatcatctggggagta
acccctgtggataatggggaccccctgaaccccaaaaacaagggaaagctaatgctggat
aacagcttcaacatttccagtccagcatctcagctgtggatcctcaacttctgccagaag
ctgaggaaccagagttttgtctttcagtcagaggagcaggacttcaccagctgcttcatt
gagacattcaaacagtggatggagaaccaggactgtgcagagggctctgtctacccctgc
tgcagtcagtccaccttcccctacaggcctgatgtctttgagctgtgcatcaagagagcc
atcatggagctggatcggagcaccaactaccatctggacagcaagacccccgggcctcga
ttcgatatcaatgacaccatcagagccatagttttagagttccagagtacctatctcttc
acactggcctatgagaagatgtaccagttctacctcgaggtggatgcctggatcacagag
gagctgcgctttgcccctgcaggcctaagtcacggctggtttgtcagcaacctggagttt
tacgacctgcaggacagtctttcagacggcactctggttgccatggcgctgtcagtggct
gtggctttcagcgtcatgctcctgaccacctggaacgtcatcatcagtctgtacgccatc
ctgtccatcgctgggaccatattcgtcacagttggctccctggtgcttctgggctgggag
ctgaatgtgttggagtctgtgactatttccgtggcagtggggctgtcagtggactttgcg
gtccactacggcgtagcctatcggctcgctccagagcccgaccgtgagggtaaggtgatt
ttctccctcagccgcatgggctctgctatcgccatggctgcgctgaccacctttgttgcc
ggggctatgatgatgccctcaaccgtattagcctacacacagctgggcacgttcatgatg
ctgatcatgtgcatcagttgggcctttgccaccttcttcttccagtgcatgtgccgctgt
ctaggaccccagggcacctgtggccagattcccctgcccaaaaagctgcagtgtcaggct
ttctctgaggccacgtccacaagcccctcatctcaagggaaaggctcaggtcaggccaag
taccagctggacagcaggggtgggcaggtggagcattatgagttagagccactggcatcc
agtcagaaaactgaggaaaaacctcgagaggagcatgaggtttgtactcagctttataat
ggaatcccccctcaccaccacactgccccgtattcacacatccattataagagcaaacct
gagagtgggagagctggtcctgagaacgggctcgtagccactctgagcacaccgtccagg
tgccagtactcacaaaacactaactgcacctgtggggacccccctcctcctcatctgcct
cagcagtggacaccccactcttgcgctcagcctccccaggactctacttcctgtcctcct
accccccagctctttcctcactcaggaaacacaccgaacaaacaaaatacttccttctta
ccttcaaacctggacccagtctatacacacatggagtgccgtatgcactacatccactgt
ccccctgcccatttccaccactgttcccaaggaagagtagcccccaggcaaggacctgca
cacagctgccatctcaggaagtactgcgtccatacttcaaacctgcaggctggctcaggc
agagaacagagacccacaaccccagcttcaaactgggacacaggcccagcttcaggtcca
gtctctggctcagagcctgtgggacaagaggaagatcacagacctgaaatgagtcaggca
agtcctggcagtagccacaatattagcaacgctgccccaacacaacctcacactcagtgc
ccctcccccttactgagctcatcacacacaacctgtcacgaaagacagaaggcgagggac
agagtccattgttgcggtgataaccatgtatccaccacaaccacacaaacaacaacgcaa
atggatgcttgttgtaaaatccctggcaaccaggagaagctcgaaagtattcccgtcaca
cgggagcaaagtgtcaaaaagtgcaagcggacctccaaaagcgagcgggcgtcctctgcc
tctccaaagaagctctactgttttaacaggacattgaaagtgaagtgcaattcagcttca
gactttaatgtgccaaaaagtgataccagtgtgcctcctattgcaataaatactaatccc
tcttctgaaagcttatgttga
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