Lates calcarifer (barramundi perch): 108895831
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Entry
108895831 CDS
T04895
Symbol
psmc1b
Name
(RefSeq) proteasome 26S subunit, ATPase 1b isoform X1
KO
K03062
26S proteasome regulatory subunit T2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03050
Proteasome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03050 Proteasome
108895831 (psmc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
lcf03051
]
108895831 (psmc1b)
Proteasome [BR:
lcf03051
]
Eukaryotic proteasome
Regulatory particles
PA700 (19S proteasome)
ATPase subunits
108895831 (psmc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Prot_ATP_ID_OB_C
AAA_lid_3
AAA_2
AAA_22
nSTAND3
DUF815
AAA_5
RuvB_N
AAA_16
AAA_28
AAA_3
AAA_25
AAA_14
RNA_helicase
ATPase
IstB_IS21
TIP49
AAA_11
NPHP3_N
Mg_chelatase
NB-ARC
AAA_33
AAA_7
AAA_24
Parvo_NS1
ABC_tran
PhoH
NACHT
Prot_ATP_ID_OB_N
AAA_18
AAA_30
TsaE
Motif
Other DBs
NCBI-GeneID:
108895831
NCBI-ProteinID:
XP_018550287
UniProt:
A0A4W6C4N6
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All DBs
Position
LG7_1:17849595..17859293
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AA seq
440 aa
AA seq
DB search
MGQSQSGGHGPGGGKKDDKDKKKKYEPPIPTRVGKKKKKTKGPDAASKLPLVTPHTQCRL
KLLKQERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH
AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP
QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA
NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG
GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT
KRRIFQIHTSRMTVADDVTLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK
KSKENVLYKKQEGTPEGLYL
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaaagccagagtggaggccacggtccagggggaggcaagaaggatgacaaggat
aagaaaaagaagtatgagcctccaattcccaccagagttggtaagaaaaagaagaagacc
aagggaccagatgctgccagcaaactaccactggtcacccctcacactcaatgccgcctg
aagctgctgaagcaggagcggatcaaagactacctactgatggaggaggagttcatcagg
aatcaggagcagatgaaacctctggaagagaaacaggaggaggagaggtcaaaggtggat
gacctgagaggaactcccatgtcagtgggcaccctggaggaaatcatcgatgacaaccac
gccatcgtttccacctcggtgggatcagagcactacgtcagcatcctgtcttttgtggat
aaggatctgctggagccaggttgctctgtattgttaaaccacaaggttcatgctgtgatt
ggggtgctgatggatgacaccgatcccttggtgacagtgatgaaggtggagaaggcccca
caagaaacctacgctgacattggaggactggacaatcagatccaggagatcaaggagtca
gtggagctgcctcttacacatcctgagtattatgaggaaatgggtattaaacctcctaaa
ggtgtcatcctatatggaccacctggcacaggcaaaacactgctcgccaaggccgtagcc
aatcagacatcggccaccttcctgcgcgtggtgggctcggagctgatccagaaatacctg
ggagacgggcccaagctggtccgagagctgttcagagtggcagaggaacacgcgccctcc
atcgtcttcattgatgagatcgatgccatcggcacgaagaggtatgactctaactctgga
ggtgagagggagatccagaggaccatgctggagctgctcaaccagctggacggcttcgac
tcgcggggagacgtcaaagttatcatggccaccaatcggatagaaaccctggacccagcc
ctcatcagacctgggagaatcgaccgtaagatcgagtttcccctgcccgatgagaagaca
aaaaggaggatcttccagatccacaccagccgcatgacagtagcagatgatgtcaccctt
gatgacctcatcctggctaaggacgacctatcaggagcagacatcaaggccatctgcaca
gaagcaggcctcatggctttgcgagaacgccgcatgaaagtcaccaacgaagacttcaag
aagtccaaggagaacgtcctgtacaagaagcaggagggcacaccagaggggctttacctc
taa
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