Lates calcarifer (barramundi perch): 108895880
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Entry
108895880 CDS
T04895
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108895880
03015 mRNA surveillance pathway
108895880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108895880
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108895880
mRNA cycle factors
P-body specific factors
108895880
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
108895880
NCBI-ProteinID:
XP_018550348
UniProt:
A0A4W6C2E0
LinkDB
All DBs
Position
LG18:12623163..12637901
Genome browser
AA seq
1320 aa
AA seq
DB search
MTDVCFATVSSMPAERKRSVNMDEKDVCAFGNKEKEKDREGERRPASARDKPKDEAKMGG
KKDGGKEEKRKRLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEEKRQQEEQERKLQEE
EAKRQREEEAALLKEKEEGHQLHQEAWERHQCRKELRSKNQNAHEGRPEEAFFSRLDSSL
KKNTAFVKKLRTLTEQQRDSLSNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSL
FHQRYAEFAPLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIY
EQLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLVPRKVKLAAEKFGLSFPPSEIISTEK
QQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQK
LLANTQSLADLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFY
ENLVDLKAFVPAILFKDNEKSSQGKDKDDAKDGREGKDTASTTEELELELEALDITDEPL
ELEGADEAENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMD
FCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRF
HIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETC
GRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPP
LQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANL
LAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIF
RTLFSFISFGVNQDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQ
RYIWWKKSIDVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSLEEATKQVTDLEREVLVK
LGLAMEKDGRSSAMSEGEGLDEEDDDGDDDEEGGAETEEQSGNESEMNEQEEDEGSENEE
EDREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENL
QQRSGEAVKVHQLDVAIPLQLKSQLKKGGSGQPCVGEGDSDISDTMQFVMLTRKGNKQQY
KILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPAN
TNRERRPRYQHPKGAPNADLIFKTGGRVKKARNERHEKRDRQERQDRTDKQERNQRYMAE
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctacagttagcagtatgcctgctgaacgcaaacgctcagta
aacatggatgagaaagacgtttgcgccttcggtaacaaggaaaaagagaaggacagagag
ggtgagagaagaccagcatctgcccgagacaaaccaaaagatgaggccaaaatgggtggt
aaaaaagatggcggcaaggaggagaagaggaagcgcctagaggaggagaagaagaagaaa
gaggaaaaggagcgaagaaagaaggaggaggagaaacagaaagcagaggaggaacagaag
aagaaagaggaggaggagaagagacagcaggaggagcaggagaggaaacttcaagaggag
gaggccaaacgacaacgtgaggaggaggcagcgctcctcaaggaaaaggaggaggggcat
cagctgcatcaagaggcctgggaacgtcatcagtgcaggaaggaactccgcagcaagaac
cagaacgcccatgagggtcggcctgaagaggccttcttcagccgactggactccagcctg
aaaaagaacactgcctttgtcaagaagctgcgtacactcactgaacagcagcgagattct
ctctccaatgactttgcctcactgaacctcagcaagtacattggcgaggccgtaagctct
gtcgttgaggccaagctgaagatctctgacgttggctgcgccgtccacctgtgctccctc
ttccaccaacggtacgctgagtttgctccgttactgttacaggcgtggaagaagcacttt
gaagcgaggaaggaagacaaggcgcccaatgtgagcaagctgcgcacagatctgcgcttt
atagcagagctcaccatcgttggcctcttcacagacaaagagggactgtcgcttatttac
gagcagctgaagaacattatcgggacggaccgggagacacacactcatgtgtcagtggtg
atcagcttctgtaaacactgtggggacgacattgctggtctcgtgccccgcaaggtgaaa
ctggctgctgagaagtttggcttgtccttccctccgagtgagataatcagcacagagaaa
cagcagccattccagaaccttctaagggagtatttcacatcgctcaccaaacacttgaag
aaggaccaccgggagctgcagaacattgagaggcagaacaggcgtatcctacattccaaa
ggggagctgagtgaggacaggcacaagcaatatgaagagtttgccacatcctatcagaag
ctgctggccaacactcagtccctggctgatctgctcgatgaaaacatgccagagctgcct
caagacaagactgtgcaggaggagcatggtcctggcattgatattttcactcctggtaag
cctggggagtatgacctggaaggagggatctgggaagatgaagacgcacgaaacttctat
gagaacttagtggacctgaaggcctttgtccctgccatccttttcaaggataatgagaag
agcagccagggcaaagacaaagatgacgcaaaagatgggagagaagggaaggacacggcc
agcaccacagaggagctggagttggagctggaggctctggacatcacagatgaacctctt
gaactggagggagcagacgaggcagagaatgaagaactggccaaaaaactgctggatgag
caagaacaagaggatgaggaggcaaacacagggtcccacttgaagctaattgtggatgcc
ttcatccagcagctccccaactgtgtcaacagagacctcatagacaaggctgccatggac
ttctgcatgaacatgaacaccaagtctaacaggaggaagcttgtccgggcgctcttcact
gtccccaggcagaggctggatctgctccccttctactcccggttggtggcaactcttcat
ccctgcatgtctgatgtggcagaggacctctgctccatgctgaagggagacttcaggttt
catattcggaagaaggaccagatcaacatcgagacaaaaaataaaactgtcagattcatc
ggggaactggccaagttcaagatgttctcaaaaacagacacgcttcattgtctcaagatg
ctgctgtctgatttcacccatcaccatatagagatggcctgtacactgctggagacctgt
ggccgcttcctcttcagatcccccgactctcacctgcgtaccagtgtcctgctggagcaa
atgatgcgtaaaaagcaggcgcagcatctggacgcccgttacgtgaccatggtggagaac
gcctactactactgcaaccccccgcccatggagaagacggtgaagaagaagaggccgccg
ctgcaggagtacatccgcaagctgctctacaaggacctgtccaaggtcaccactgagaag
gtgctgaggcagatgcgcaagctgccatggcaggaccccgaggttaagagctacctgatc
tgctgcatggtcaacatctggaacgtcaagtacaacagcatccactgtgtcgccaacctg
ctggccggcctggtggcctaccaggaggacgtgggcatccacgtggtggacggagtgctg
gaggacatccggctgggcatggaggtcaaccagcccaaattcaaccagcggcggatcagc
agcgccaagttcctgggtgagctctacaactaccgcatggtggagtctgccgtcattttc
cgtaccctcttctccttcatttcctttggggtcaatcaggatggcagccccagccctctg
gaccctccggagcacctgttccgcatccgtctggtctgcaccttgctcgacacgtgcggc
cagtactttgaccgcggctccagcaagaggaagctggactgtttcctcatctacttccag
cgatacatctggtggaaaaagagcatcgatgtttggaccaaggatcacccgttccccatt
gacatcgactacatgatcagcgacaccttggagctgctcaggcccaagatgaggctcagc
tgctccctggaagaggccaccaaacaggtcaccgacctggagagggaggtgctcgtcaag
ctaggtctagccatggagaaggacggtcgctccagtgccatgagcgagggggaggggctc
gatgaggaagacgatgatggcgacgacgacgaagagggaggtgctgagaccgaggagcag
tcgggcaatgagagcgaaatgaacgagcaggaggaggatgaagggtctgagaacgaagaa
gaggatagggaagaagaggaggaagagaacaccgactacctgacggactccaataaagaa
aatgagactgatgaggagaacaatgaggtgaccattcgtggtggtggactgaagcatgtg
gcctgcgctgaggatgaggacttcattcaggctctggataaaatgatgcttgagaacctg
cagcagcgtagcggtgaggcggtgaaggtgcaccagcttgacgtggccattcctctgcag
ctgaagagtcagctgaagaagggaggctccggacagccgtgcgtcggggagggagactcg
gacatctccgacaccatgcagttcgtcatgctgacacggaaaggcaacaagcagcagtat
aagatcctgaacgtgcccctgtcatctcacctggcggcgaaccacttcaaccagcagcag
gccgaacaggaggagcgcatgaggatgaagaaactcaccctggacatcaatgagagacag
gagcaggaggactaccaggagatgatgcagtcccttgcccagcgtccagctccagccaac
accaaccgggagcgtcggcctcgctaccagcacccgaaaggtgctcccaacgccgacctc
atcttcaagactggaggaagagtgaaaaaggcaagaaatgaaaggcatgagaagcgagac
agacaagagagacaagacaggacagacaagcaggagagaaaccagagatatatggcggag
tag
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