Lates calcarifer (barramundi perch): 108895943
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Entry
108895943 CDS
T04895
Name
(RefSeq) denticleless protein homolog
KO
K11790
denticleless
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108895943
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108895943
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF4
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
NBCH_WD40
WD_LRWD1
MIOS_WD40
TAF1C_beta-prop
Motif
Other DBs
NCBI-GeneID:
108895943
NCBI-ProteinID:
XP_018550475
UniProt:
A0A4W6F0J9
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Position
LG7_1:complement(8182383..8188849)
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AA seq
658 aa
AA seq
DB search
MLFRSIVDRGVGRRRQNALPADPRPRYPLSSLLQGYQCVRHDEHISYGNLGDSVPPFGLA
FSSAGNLQNVLAAANEEGIVRIYNTENRENPLLKEWLAHENAVFDIAWVPGEPQVVTAAG
DQMARLWDVKSGDMLGSFKGHLCSLKSVAFSPEEKAVFCTGARDGNIMVWDTRCSKKDGF
YKQVKQISGAHNKAETNPPSKTKRRRSCPRGMAPSVDTQQSVTVVLFRDQHTLISSGAVD
GVIKMWDLRKNYTVHRQDPVPLQTYPYPGSCMRMRLGYSGLVLDSTRSNVMCNCTDDNIY
TFNVSGVKTTPVAVFSGHQNSSFYVKSTISPDDQFLASGSSDNHTYIWKISDPQHPPMML
QGHSEEVTSVAWCPTDFTKIASCSDDHTVRIWRLHREMDGVQSTVGEANLVGWARPKSPT
RPSIRTETTPAKTQRTESLGGLSSPQLAVCAPSGAALPLPSSTTSPVQSQEAKAATVRQR
TPSSIKQWLSPSHGSPSQVSPPLRRVLSPCPQSPTSSASPIERRAKRRLETGNSVLSTGC
EGAGQCDCVTELYPTAKRSRALSGICCPAQESRVQTDCHTDDKQASPRQSGKENYSPRRM
DWLSVMGQKMRKGQGSPRSPRSPSASKKQEGKTPASPTIRSPQTMKKISTYFTRQPPE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgttgttccgctctattgttgacagaggagtgggcagacggaggcagaatgccctccct
gcagatcctcggcccaggtatcctctgagctccctactgcaaggctaccagtgtgttcga
catgatgagcacatctcctatggtaacctgggtgactctgtgccaccgtttggactagct
ttctcctcagccgggaacctacagaacgttcttgcagctgctaatgaagaaggcattgtt
aggatctacaacacagaaaacagagaaaacccgctccttaaagaatggctggctcatgag
aatgctgtctttgacattgcttgggtaccgggggagcctcaggtggtgacggctgcaggt
gatcagatggccaggttgtgggatgtaaagtcaggagacatgttaggcagcttcaaaggc
cacctctgcagcctcaagtccgttgcattctcacctgaggagaaagctgtgttctgtact
ggagccagagatggaaatattatggtctgggacaccaggtgcagcaaaaaagatggtttc
tacaaacaagtgaaacagatcagtggcgctcacaacaaagcagagacaaaccccccctct
aaaacaaagaggagacggagctgcccgcgtggcatggctcccagtgtggatacccagcag
agtgtcacagtggttctgtttagggatcagcataccctcatctcttctggggctgttgat
ggagtaatcaagatgtgggatctgaggaagaactacaccgtgcaccgtcaggatcctgtt
ccgctgcagacgtacccatacccgggctcttgcatgcgcatgcggctgggttattcaggg
cttgttctggactccacaagatccaatgtcatgtgtaactgcacagatgataatatctac
acgttcaacgtcagtggagtaaaaacaactccagtggcagttttcagcggccaccagaac
tcctcattctatgttaagtccactattagtccagatgaccagttcttggccagtggctca
agtgacaatcacacatacatctggaagatctcagatcctcaacatcctcccatgatgctt
caaggccacagtgaggaagtgacatctgttgcatggtgcccaacagatttcactaagatt
gcttcctgttcggatgaccacactgtacggatctggaggcttcaccgggaaatggatgga
gtccagtctacagtgggagaagccaaccttgtaggctgggcacgtcctaaatctcccaca
aggccttcaatcagaactgagacgacacctgcaaaaacccagaggacagagagtctcgga
ggcctgtcctcaccgcagcttgcggtctgcgctcccagtggagccgccctgcctctgccc
tccagcaccacctcacctgtccagtctcaggaagcgaaggctgccactgtccgccagaga
acgccatcctccatcaaacagtggttatctccaagccacgggtctcccagtcaggtcagc
cctcctctccgcagggtgctgagcccgtgtccccagagcccgacgagcagcgcctctccc
atcgaacggcgggccaaacgcaggctggagaccggcaacagcgtgctgtccacaggctgc
gagggcgccggacaatgcgactgcgttactgaactttaccccacggccaagagaagccgg
gccctgtccggcatctgctgccctgctcaggagagccgggtacaaacagactgtcacaca
gacgacaagcaagcctcacctagacagagtggaaaggagaattactctcccagaagaatg
gactggctctctgtgatgggccaaaagatgaggaaaggtcaaggaagcccgcgttctccc
agaagtcccagtgcctctaagaaacaagagggcaagacaccagcttcaccaacaatccgc
tcgccgcaaaccatgaagaaaatctcaacatatttcacaagacagcctccggagtga
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