Lates calcarifer (barramundi perch): 108895964
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Entry
108895964 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: calpain-3b
KO
K08573
calpain-3 [EC:
3.4.22.54
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108895964
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108895964
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.54 calpain-3
108895964
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C2: calpain family
108895964
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
Calpain_u2
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
CAPN13-like_C_EFh
EF-hand_5
Integrase_DNA
Motif
Other DBs
NCBI-GeneID:
108895964
NCBI-ProteinID:
XP_018550497
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All DBs
Position
LG7_1:8342741..8354784
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AA seq
782 aa
AA seq
DB search
MPQAEADADKMGDMEHEGKVPLAEETKVKVLYETQASLGPDDKADYSPTGTNSIYSAILS
RNEAVKDAKRLKTFLELRDKYVRKNVLFEDPLFPANDSSLFYSHKPLMKFEWKRPSEICE
NPQFIVDGANRTDICQGELGDCWLLAAIACLTLNEKLLYRVIPPDQSFTENYAGIFHFQF
WRYGEWIDVVVDDRIPTCKNQLVFTKSFRKNEFWSALLEKAYAKLHGSYEALKGGNTLEA
MEDFTGGVTEYFELSEAPKDLYNIMRKALERGSLMGCSIDIFSASDLETRTEQGLVKGHA
YSIIGLAECDGVAKNTKIRLIRLRNPWGWVLWKGPWSANSKEWSTISIADKENLRKQTVE
SSEFWMSFDDFKRNFTKLEMCNLTPDTLQGDERHSWTVSVNEGRWVRGSSAGGCRNFPDT
FWTNPQYRLQLYEEDDDPEDGQVVCTVVVALMQKGRRMQRHEGARFLAIGFSIYEVPKEM
CGQNQHLQKDFFLYTASKAKSKTYINLREVTERFRLPPGEYVIIPTTFEAHKEGEFILRV
FSEKQSTSEEAENTIGSAKMQQDKKKKGKPIVFVSDRARANKEIEHDGIQGEKRKKPKRK
LLEPEEETEEEKKFRAIYQQIAGEDMQICANELKTVMKNVLARHSEIKTKEGFSLETCRS
MIALMDTDGTGKLNLQEFKHLWKKIKEWQLIFKRYDKDKSCSISSFEMRNAIHDAGFHLN
KQLYDIIAMRYADEHLNIDFDSYICCFVRLEGMFRAFNAFDKDGDGLIKLNVLEWLQLTM
YS
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgccacaggctgaggcagacgctgataagatgggggacatggaacatgaagggaaagtg
cctcttgcggaagagacaaaggtgaaagtgctttatgaaactcaagcatcactcgggcct
gatgacaaagctgattattctcccactgggacaaactcaatctactctgccattctgagc
agaaatgaggccgtcaaggatgccaagcgtcttaaaacttttctggaactgcgagacaaa
tatgtgaggaagaacgttttgtttgaagaccctctgttccctgcaaatgattcctcactc
ttctacagtcacaaacctctgatgaagtttgagtggaaacgtccttcggaaatttgtgaa
aacccccagttcatcgtagatggagccaacaggacagacatctgtcagggagaattgggt
gactgctggctgctcgccgccatcgcctgtctgacactgaacgagaagctgctgtacaga
gtgattcccccggatcagagcttcactgagaattacgccggcatcttccatttccagttc
tggcgttatggcgagtggatcgacgttgttgtggacgaccgcatccccacctgcaagaat
cagctggtgttcaccaaatctttcagaaagaacgagttctggagcgctctcttggaaaaa
gcttatgcaaagttgcacgggtcttatgaggcactgaaaggggggaacaccttagaagcc
atggaggatttcacaggtggagtgaccgagtacttcgagttgtctgaggcgcccaaagac
ctctacaacatcatgaggaaagccctggagagaggctcactgatgggctgctccatagat
attttttctgccagtgatctggagactcggaccgaacaggggctggtcaaaggccacgcc
tactccatcatcggcctggcagagtgcgatggggtcgcaaagaacaccaaaattcgcctg
attcgcctgcgaaatccctggggttgggtgctgtggaagggaccctggagtgcaaattca
aaggaatggtcgacgatttccatcgcagacaaagagaacctgagaaaacagactgtggaa
tccagtgagttctggatgtcttttgacgatttcaagaggaacttcaccaagctggagatg
tgtaacctaacccctgacacactgcagggtgatgaaagacacagctggacagtatcggtc
aatgagggtcgctgggtgagaggcagctctgccggtggctgcaggaacttcccagacaca
ttttggacgaaccctcagtatcggctgcagctgtacgaggaggacgatgacccggaggac
ggacaggtggtttgcaccgtcgtcgtagctctgatgcagaaaggtcggaggatgcagcgc
catgagggggccagattcctcgccatcgggttttccatctacgaggtgccaaaggagatg
tgtggacagaatcagcacctgcagaaggactttttcctgtacacagcctccaaagctaaa
agcaagacctacatcaaccttcgagaggtaacagagcgtttccgcctgcccccaggagag
tacgtcatcatccccacaacctttgaggcccataaggagggagagttcatcctcagggtc
ttctctgagaagcagagcacgtccgaggaagcggagaacacaattggttcggccaaaatg
cagcaagacaagaaaaagaaaggaaagcctattgtatttgtgtcagacagagcgcgcgcc
aacaaagaaatcgagcatgacggcattcagggggagaagaggaagaaaccgaagcgaaaa
ctgttagaacctgaggaggaaactgaggaggaaaaaaagttcagagccatttaccaacag
attgctggtgaggacatgcagatctgtgccaatgaactcaagacggtcatgaagaacgta
ctcgccagacatagtgaaataaagacgaaagagggtttcagtctggagacgtgtcggagt
atgatcgccttgatggacactgatgggacaggaaagctgaacctgcaggagttcaagcac
ttgtggaaaaagattaaggagtggcagctgatcttcaagcgttatgataaagacaaatct
tgctccatcagtagttttgagatgaggaacgctattcatgatgcagggtttcacctcaac
aaacagttatatgacatcatagcgatgcgctacgcggacgaacacctcaacatcgacttt
gacagttacatctgctgctttgtgaggctagagggcatgttcagggcttttaatgccttt
gacaaagacggagatggactaatcaaacttaacgtcctggagtggcttcagctgaccatg
tactcttag
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