Lates calcarifer (barramundi perch): 108895993
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Entry
108895993 CDS
T04895
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108895993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108895993
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108895993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf-RING_UBOX
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_EML_2
WDR55
zf-C3H2C3
Beta-prop_WDR3_1st
Beta-prop_HPS5
zf-rbx1
EIF3I
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
108895993
NCBI-ProteinID:
XP_050932399
UniProt:
A0AAJ8DVH9
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All DBs
Position
LG16_LG22:complement(21110779..21176314)
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AA seq
1403 aa
AA seq
DB search
MSESPDARSLLSASSQLNLMEVDAIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CVLSTDNMDAHSCDTSSLASSDSGDPAHLKRKKRTVDLNATVHGSVLRHSLLKGISAQIV
SAADKVDAGLPTAITVSGVIAVGTSHGLALVFDTNQALRLCLGTKTTGAEFGAVSALSIN
QDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRAPPDLRDHPITHYSLLAMASLTKILV
IGLKPSLKVWMTFPYSKSDPSSVPQLAWQFVPVQKTVNPILAFCKGDTVHFLLVKKEETG
TIHVIKQRQLHLSCDIISLSWINSRTLVLVDSHEKLHVVDRPSQEVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIVYLGTKSAHIMTLRNWRERIDFLL
KQEHFVEALSLAWSFHEGTAKAVVGLFGDPVKRKAVVDDKMVEILCQFAENALKKCPEQG
KIQVMEQHFHDVIPVLVDYCLLLQRADLLFNQLYARLAENTVAKGVFLESLETYIVADRL
GHLTTPIMRDLLAHYHSNGMMDSLERCIVHLDVTSLDIQQVVRVCWENQLYDAMIYVFNS
GMNDYITPMEKLFAVIGPPLREGRNLTDEEVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
VQVKNQVFEFLIRLHSADSSEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQALEY
QQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCPDD
DSRHTERQQVLLELLQVGGVVQFNEERLLALAEKAKFYQICEFLYEKKHLYDRIIDCYLR
DSLRKGEIFSYIHNLLSMPGYSPEEKQTVKDKVLQHIQELVTLDPSKSADIVVFHLTEEV
QQIISELEDDQLLFKFLSCLLEPREGHHSGIILPQERDLHELLLDLLCRFAPQQLLSFLQ
ASQHYRLEEAIQITEKYHHNEATAYLLEKKGDVHGAFSVLLETLKEKLCLLTAESDTGVE
GGDGEQDEEERCSDSTLMRVKDSLNDIIALCHRSSHNLYQQQREALWFPLLETMMASQKL
VKGINAKHTSEVLKELTMKVLNCMSSFISLPAIIQRILQDPVYGKGKLAEIQGLILGMLD
TFNYEQTLLETTTSLLNHDLHWSLAHLRAAVTRGLHPRQDYCNICLQQYKRRQDSAEEII
VFSCGHLYHLQCLQQKDCGWGFASEQQQRWSCYKCSSSQGGRGGASTEPNRGRTTSLAQT
RVTSMHHDAGAEAHRKKVFVEATLDLQQEQSWDQLRCLYRGPSRLSILSELSHSNEKTGL
LMPAQTGTENSQLKLSPPPLLEE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctccggacgcccgcagtctgctctctgcttcctcccagctcaacctgatg
gaggtggacgcgatcgatgataaggagtttgacattccccaagtggacacacctcccaca
ctggagagcatcctcaatgagctagaggatgaggaggaaccatttgtgttggaggacacc
tgcgtactaagcacagacaacatggatgctcactcctgtgacacatcctctctggccagc
tctgacagtggagacccagcacacctcaaacgaaaaaagaggaccgtggatctgaatgca
acagttcatgggtctgttcttcggcacagcctgctgaagggcatctctgcacagatcgtc
tctgctgctgacaaagtggatgctggactgccaactgctataacagtgtcaggtgtaatt
gctgtgggaacgtctcatggcctggctctggtgtttgataccaaccaggccctgcgactc
tgtctgggtaccaagacaactggggcagagtttggagctgtctctgccctcagcatcaac
caggattgttcacgacttctctgtgggtttgccaaaggacagattacaatgtgggatcta
gccaatgggaaacttctgagaactatcactgatgcccaccctccaggaacagctatactg
catgtgaagttcacagatgacccaactctcgcggtgtgcaatgacagtggaggatctgtt
tttgagctggccttcaggcgggtgatggggatgcggtcctgtgactctcgatgtctcttc
agtggttctaaaggggaggtttgctgtattgaaccactgcgtgctcctccagacttaaga
gaccatcccatcacacactactctctgctggctatggcttctctcactaaaattctggtc
attggactgaagccttccctgaaagtctggatgacttttccatacagcaagtctgatccg
tccagtgttcctcagctggcctggcagtttgttcctgttcagaagacagtcaacccaatc
ctggctttttgcaaaggagacacagtccacttcctcctggtgaagaaggaggagacaggg
accatccatgtcatcaaacaaagacagctccacctcagctgtgacatcataagcctgagt
tggatcaacagtcggacactggtcctggtagacagccatgaaaagctgcatgttgtggac
cggcccagtcaggaggttttggagactctggacttggagcaggtgcagctggtctataac
agccgacatttcaaatcgctggccactggagggaatgtctctcaggctctggctttagtt
ggagaaaaggcctgttaccagtcagtctccagctatgcaggacagatcgtctatttgggc
accaagtcggctcacatcatgactctaaggaactggagagagcgtatagacttcctgctg
aaacaggagcattttgttgaggcactctccttggcctggtccttccacgagggaactgct
aaggctgtggttggcctgtttggagatccagtaaaaaggaaagcagtggtagatgacaag
atggtagagatcctttgtcagtttgcagagaatgctttgaagaagtgtccagaacaaggc
aagatccaagtgatggagcaacatttccatgatgtgattccagtcctggtggattactgc
cttctgctgcagagagccgacctgctgttcaaccagctgtatgctcggctggcggagaac
acggttgctaagggtgttttcctggagtcgctggagacgtacattgttgcagaccgcctt
ggtcacctcaccacacccatcatgagggacctcctggctcattaccatagcaatggtatg
atggacagcctggagagatgcattgtccatctggatgtcaccagcctggacatacagcag
gtggttcgagtatgctgggagaaccaactgtacgatgcaatgatctacgttttcaacagc
ggcatgaatgactacattacacctatggagaagctctttgcagtgattggaccaccactt
agggaggggaggaacctaacagatgaagaagtggtgatgggaaacaaacttctggtgtac
ataagctgctgtcttgcaggcagggcatatcctctgggagatatccctgaagaccttgtg
gttcaagtcaagaaccaggtgtttgagttcctgatccgtcttcattcagctgactcgtca
gaggaggaagaggttttcccatttattcgtactctcctccactttgacacccgggagttc
ctcaatgtcctggccatgacatttgaagacttcaagaatgacaagcaggctcttgagtac
cagcagaggatagtagacatcttactacaggtgatggtggacaatccagactttactccc
tcccaggtgggagggctcttcacctttttggctcgacagttggccaaaccagataacaca
ctttttgtgaacaggaagctctttgatcaggttctggagttcctgtgttgcccagacgat
gactcccgacacactgagaggcagcaggtcctgctggagctgctgcaggttgggggtgtc
gtccagtttaatgaagaaaggttgttggctttggcagagaaggccaagttctaccaaatc
tgtgaatttctgtatgagaagaaacatctgtatgacaggatcattgactgctacctgaga
gactcgctcagaaagggggagatcttcagttacatccacaatctgctgtccatgcctggg
tacagcccagaagagaaacaaacagtcaaggacaaagtactgcaacacatccaggagctg
gtgacccttgaccccagcaagtcagctgacatagtggtgtttcacttaactgaggaggta
cagcaaatcatctctgagcttgaggatgaccagctactgttcaagttcctcagctgcctc
ctggagccacgggagggccatcattcagggatcatcctgcctcaggaacgtgatctccat
gagcttctgctggacttactgtgtcgcttcgcaccccagcagctcctgagcttcctccag
gcctcgcagcactacagactggaggaggccatacaaataacagagaagtaccaccacaat
gaggctaccgcctatctgctggagaagaagggagatgttcatggtgctttttctgtcttg
ttagagacactaaaggaaaaactgtgtctcctcactgctgagagtgacacaggagttgaa
ggaggagatggagaacaggatgaagaagagagatgtagtgattcaactctgatgagagta
aaggattcactgaatgatataattgccttgtgtcaccgaagctctcacaacctgtaccag
caacaaagagaggctctgtggttccctctgctggagaccatgatggcttctcagaaacta
gtgaaggggatcaatgccaaacacacctctgaggtgctgaaggagctgacaatgaaggtt
ctcaactgtatgagcagcttcatctctctgcctgccatcatccagcgaatactgcaggac
cctgtctatgggaaagggaagctggcagagatccagggcctcattctgggtatgctggac
acttttaactatgaacagactttacttgaaacaactaccagtctgctgaaccatgacctc
cactggtccctggctcacctgcgtgctgctgtcacaagggggctccacccacgacaggac
tactgtaacatctgcctccagcagtacaagaggaggcaggattcagctgaagagatcata
gtgttcagctgtggccacctgtaccacctgcagtgcctgcagcagaaggactgtgggtgg
ggctttgcatcagagcagcaacagcggtggagctgctacaaatgttcctccagccaagga
ggaaggggcggggcctccaccgaaccaaacagaggccgcaccacgtccctggcacagact
cgtgtcacatccatgcatcatgacgcaggagcagaggctcacaggaagaaggtgtttgtt
gaggcaacattggatcttcagcaggaacagtcctgggatcagcttcgctgtttatatcga
ggaccatccaggttgtccatcctttcagaactctcccatagcaatgagaagacagggctt
ctaatgccagcccaaacaggaacagaaaattcccaacttaaactctctcctccacctctg
ttggaagagtag
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