Lates calcarifer (barramundi perch): 108896166
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Entry
108896166 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein 43
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108896166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcf03009
]
108896166
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108896166
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_THOC3
Utp12
Beta-prop_IFT122_1st
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
ANAPC4_WD40
WDR55
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR3_2nd
WDR90_beta-prop_4th
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR41
EIF3I
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_ACSF4
ASA1
Beta-prop_SPT8
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_SCAP
PEP5_VPS11_N
WD40_MABP1-WDR62_1st
Paf1
NBCH_WD40
CFAP251_N
Beta-prop_IP5PC_F
Beta-prop_WDR75_2nd
Beta-prop_Nup120_160
SGL
Motif
Other DBs
NCBI-GeneID:
108896166
NCBI-ProteinID:
XP_018550714
UniProt:
A0AAJ7Q9Y3
LinkDB
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Position
LG19:4828713..4842809
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AA seq
653 aa
AA seq
DB search
MAADAGSSPLQLPCVFSPKSRQYLALCAQDGRLRIWNTDSKTLHQEYVPSAHLSATCTCI
AWGPCRTVKEGPQRKKRKSEAVQVEEKPDLLAMGTAAGTVLIYSTAKGALHCTLDGGHSG
GVNCVQWHPEDSLLYSGSDDTNIIEWDLQTGKMRSKWKADRAAVTSLCVSHDGKLLLSAG
QVIKMWDLDTKEVYRKFTGHSTAVTTLRFATTRPPDSNGLYFLSGAAHDRLLSVWQVRQD
GKDKNSVVSFTLTDEPRHIDLVTSNSKEEAVRLSVVCKDGQLHLFEHFLNGPCKKPLSPL
CSVQMSDTKDSPVPIPLLAAALGADTRNVLLAYGNHLQPVMERVEINTAERHVCLTRDVQ
TNLSISMETAVSKVKTPIVSTKSRVLVPGLPGHQAPVKGMSQGSEKRKKDTDTKEMSIAE
RLGEIDLIYGSTEKGAPKGTATLQTDNFAVLLVQGLESNDANILNKVFQTRKEVVIKKTV
ARLPLPAVLPLVEEITKRLQGHPFTAVLMVRWLKAVLMHHTSYLASLPDLVTQLGVLYHM
IESRVKMFHKLTKLHGKLYLLMTQVATSDSSTTVTDVDHTAKLVYEEESSDEDEASGDEG
LPDDDSDNWEEEEEVVEETMEEDDEEGEDPDSRTESKANGEEDMEHENESEEE
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgatgctggcagttctccgctgcagctaccctgcgttttttcacctaaatca
cgacagtatttagcactgtgtgcccaggatggcagacttcgcatttggaacacagatagt
aaaacacttcaccaagaatacgtgccttcagcccatttgagtgccacttgtacctgcata
gcctggggaccatgccggacagtcaaggaggggcctcagaggaagaagaggaaatcggag
gcggtgcaggtggaggagaagccagacctgttggcgatgggcacagcagcgggcactgtg
ctcatctacagtacagcaaagggagcactgcactgtaccctggatggaggccatagtgga
ggagtgaactgtgttcagtggcaccctgaagatagtttattatacagcggctcagatgat
actaacattattgaatgggacctgcagacaggcaagatgcgaagtaagtggaaggcagac
cgtgcagcagtcaccagtttgtgcgtgagccacgatggcaaactgctgctttcagctggg
caggtaatcaagatgtgggacttggacaccaaggaggtttacaggaaattcacaggccac
tccacagctgtgacgaccctgcgctttgccaccacgcgacctcctgacagcaatggcctc
tatttcctgtctggtgctgcacatgatcgactgctcagtgtatggcaagtacgacaagat
ggaaaggacaagaactcagtggtgtccttcacactgacagacgagccacgacacatcgat
cttgtcacatccaacagcaaagaagaggcggtgaggctgagtgtcgtgtgtaaggatggg
cagttacacctctttgagcactttttaaatgggccctgtaagaagcccttgtcgcccttg
tgttcagtgcagatgtcagacacaaaggactccccagtgccaatccccctgctggcagca
gccctcggagctgatactaggaatgtactgcttgcctatggcaaccacctacagcctgtg
atggagagagtggagatcaacacagcagagaggcatgtgtgtttgacccgggatgttcag
accaacttgtccatttccatggaaaccgccgtttccaaggtgaaaaccccaattgtcagc
accaagagcagagtgttggtcccagggcttcctggccaccaagccccagttaagggaatg
tcacagggatcagagaagaggaaaaaagacacagacaccaaagagatgtcgatagcagag
cgactaggtgaaatcgatctgatctacggttccaccgagaagggagctcctaaagggacg
gccactttacagacagacaattttgctgtgcttctggtgcagggcctggagagcaacgat
gccaacatcctaaataaagtattccagactcgtaaagaggtggtaataaagaaaactgtt
gctcggttacccctccctgctgttttaccgttggtggaagagatcacaaagaggctccaa
gggcacccttttacggcagttctaatggtacggtggctcaaggctgtcctcatgcatcac
acgtcatacctggcatcgctgccagacctggttacccagctgggagtgctttatcacatg
attgaaagcagagtgaagatgttccacaagctaacaaagctgcatgggaaactgtatctc
ctaatgacacaggtggcgacaagtgacagcagtaccacagtcacagatgttgaccacaca
gctaagctggtgtatgaagaggaatcatctgatgaagacgaggcctctggtgatgaaggt
cttcctgatgatgactctgataattgggaagaggaggaggaggtggtggaggagacaatg
gaggaagacgatgaggagggtgaggatccagacagcagaacagaatccaaagctaacgga
gaggaagacatggagcatgagaacgagagcgaagaagaatga
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