Lates calcarifer (barramundi perch): 108896224
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Entry
108896224 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: girdin
KO
K25392
girdin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108896224
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108896224
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HOOK_N
KASH_CCD
DUF4472
Motif
Other DBs
NCBI-GeneID:
108896224
NCBI-ProteinID:
XP_018550776
UniProt:
A0AAJ7QA05
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All DBs
Position
LG16_LG22:14428131..14493162
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AA seq
2028 aa
AA seq
DB search
MESEVFTPLLEQFMLTPLVCWVKTVGQLAVTDGTKLSEYIELVDGIYLNEIMLEINPKAT
VQRTNKKVNNDPTLRIQNLSILIRQIKAYYQENLQQLVMMPLPNVLVLGRNPLSEQGLEE
MKKLLLLLLGCAVQCEKKEEYIERIQTLDFDSKAAIASHIQEVTHNQENVVDLQWLESGE
MPPEDLDSLSRNLAFHLKRLVDERDIQLETIVELTQERDCVQLSPLAPCPTQSPGDSPSM
RRTESRQHLSVELADAKAKIRRLRQELEEKSEQLLDTRQELENMEVELKRLQQESYQLLS
DARSARAYRDELDALREKAIRVDKLESELSRYKERLHDIEFYKARVEELKEDNQVLLETK
TMLEEQLDASRTRSDKLHLLEKENLQLKSKIHDLEMERDLDRKRMEELLEENLVLEMAQK
QSMDESLHLGWELEQLAKTPELTETPQKSLGEEVNELTSSRLLKLEKDNQTLLKTVEELR
GAAGQDTVAKLAKLTQENQKLNQKFEHLQSELTADRESLRSAESLSTDLMKEKALLEKTL
ETLRENSERQMKGLEQENKHLSQTVSSLRQRCQVGAEARVKDVEKENRVLHESICETTAK
LNKMEFERKQLRKELEVMKEKGERAEELEIQMQKLERDNESLQKKVASLGITCEKVSSLE
KENTELEAEGRRLKKKLDALKNMAFQLEALEKENSQLEQENLELRRSAESLRSAGAKAAQ
LEAENRELESERSQLKRSLELLKASSKKTERLEVSYQGLDTENQRLQKALENSSKKIQQL
EAELQEVETENQTLQRNLEELKISSKRLEQLEQENKTLEQESSQLEKDKKLLEKENKRLR
QQAEIRDSKLDDNNQRISSLEKENRTMGKEMIFFRDSCTRVKDLERENKELVKQATIDKK
TLITLREELVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLLDEGSDDRFKLLETKLEST
LKSSLEIKEEKIAALEARLQESSNLNQQLRQELKTVKKNYEALRQREEEERMVQSSPPRG
GEDPQSVSKWEKESHETTRELLKVKDRLIEVERNNATLQAEKAALRSQLKQLETQSSNLQ
AQIVALQRQTASLQENNTTLQTQNAKLQVENSTLSSQSAALMAQNAQLQSQQSSVEGERE
GALKEKEELRATYELLLRDHEKLAALHERQAAEYEALIGKHGGLKSSHKSLEQQHRDLED
KYKQLLQRKGDLEELEKNLKEQQEKMALENQTHQATADQCKLLKEENDRLNTTYRQLVRD
NENLQLDHKNMKSQLNSAKLEQTKLEAEFSKLKEQYQQLDITSTKLTNQCELLSQLKGNL
EEENRHLLDQIQTLMLQNRTLLEQTMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQ
YKFYDPSPPRRRGNWITLKMRKLIKPKSRERMRSLTLTPSRSESGDGFLTFPQDSQDSSS
IGSGSNSLDDALQHKRSSRRRGQQSHAQGQGSSNAIKRLPFMRNRSKDKDKAKAIYRRSM
SMNDLLQTMAVAGGPGAQWAGSSENLDGAEGGDAGMTGRSRRGGQRMKELAFSTNAIDCA
ALTLPSAGHSRAKLRLQVKDNVSCEDVAGSSDDPKSQATRPSSLHSNRTTSSNSNNNSHL
TSPLEGKGTLNGSLSRPHSESSGEFSLSLDQDVWSSSGSSPVQQPTSSRSSHQSPLQLRR
SLDPSSATGSPGQTQIRKTGSPGSEVLSLQQFLDEGIDPAESGSQENLTVDSPRLSTSSD
HVQKERTSTKGRGILRSSSGKAAPVSSDRPPRSSGQPGRPTLRKAESTRVKGSVPIRSSL
SSQGKATSVSERLDSASSTLPRASSVISTAEGTTRRTSIHDLLSKDNRQPVSVDVSPPVA
STKAGVRSQPTPSEYHPISTNLKGSLITTTTTPLPKSLSLPCHSSEDPDLSTLESFLGPS
FTVDSVFMDSIFSESAGKNLPFLSLNPTLVSNISGPPVTNKTSPVPPVANHISTQNQTPH
SQSNGQMRSSPASLKEYREGVDPNLVNNPDQSLSPEDNQSLWYEYGCV
NT seq
6087 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgaggttttcacccctttgctggagcagtttatgctcacgcctctggtctgc
tgggtgaagactgtcgggcagctggcagtgaccgatggcaccaaactatcggaatatatt
gaattagtggacgggatttacctgaacgagataatgcttgagataaatcccaaggccaca
gtgcagaggaccaacaagaaagtgaacaatgaccccacactgcgcatccagaacctctcc
attctcatcaggcagattaaagcctactatcaggagaatctccagcaactggtcatgatg
cctttaccaaacgttctggtactgggccggaaccctctgtctgagcaaggtctggaggag
atgaagaaactgttgctgctactactaggctgtgctgttcagtgcgagaaaaaggaagag
tacattgagcgtatccagactctggactttgacagcaaagctgccatagcatcccacatt
caagaggtgactcataaccaggagaatgtagtggacctgcagtggttggaaagtggagaa
atgccacctgaagatctggacagcctctccagaaacctggctttccacctcaaacgcctg
gtggatgaaagggacatacagctggagactatagtggagttaacccaggagagagactgt
gtgcagttgtctccactggctccctgtccaacacagtctcctggcgactcccccagcatg
agaaggaccgaaagcagacaacatctctccgtggagctggctgatgccaaggctaagatc
agacgcctgcgacaagaactagaggagaagagtgagcagcttttggacaccagacaggag
cttgagaacatggaggtggagctcaagagacttcagcaagagagctaccagctgttgtcg
gatgcccggtcggctcgggcctaccgtgacgagctggacgcactcagagagaaagcgatc
cgtgtcgacaaactggagagcgagctgagccgatacaaggagagacttcacgacattgag
ttttacaaggccagagtcgaggagctgaaggaggacaatcaagtcctgctagagactaag
accatgctggaggaacagctggatgcgagcaggacccgatctgacaaactgcacctcctg
gagaaagagaatctgcagctcaaatccaagatccatgacctggaaatggagcgggacttg
gaccgtaagcgtatggaggagctgttggaagagaaccttgtgcttgaaatggcccagaaa
cagagcatggatgagtctctgcacctgggctgggagctggagcaactagccaagacacca
gagctgactgaaactcctcagaagtctctgggtgaggaggtgaatgagttgacctccagc
cgtctgttgaagctggagaaagacaaccagaccctgctgaagactgtggaggagctcaga
ggagcagccggtcaggacactgtggcaaaactggctaaactcacccaagaaaaccagaaa
ctgaaccagaaatttgagcatctgcagagtgagctgacagcagacagagagtctctacgc
agtgctgagtcactcagcactgacctgatgaaggagaaagctttactggagaagactctt
gaaacactcagagaaaactccgagagacagatgaagggtctagagcaggaaaataagcat
ctgagccagacagtgtcgtctctgcgtcagcgctgccaggtgggtgccgaggcccgggtc
aaggatgtggagaaggagaatcgtgttctccacgagtccatctgcgaaacgactgccaaa
ctcaataagatggagtttgaaaggaaacaactacgtaaggaacttgaggtgatgaaggag
aaaggtgagagagcagaggagctggagattcagatgcagaagctggaaagggataacgag
agcctgcagaaaaaggtcgccagtcttggaatcacgtgtgaaaaggtgtcttctttggag
aaggagaacacggagctggaggcagagggccgtcgtctgaagaagaagctggatgctcta
aagaacatggccttccagctggaggctctggaaaaggagaactcccagctagagcaggag
aacctggagcttcggcgctcggccgagagcctccggtcggcgggggccaaggccgctcag
ctcgaagccgagaacagggagctggagagcgagaggagccagttgaagcgcagcctggaa
ctgctcaaggcctcatccaagaagacagagagattagaggtgagttaccagggcctagat
acagagaaccagcgtctgcagaaggctttagagaacagcagcaagaagatccagcagttg
gaggcagaactgcaagaggtggagactgagaatcaaactctccaacgcaacctggaggag
ctcaagatctctagcaaacgcctggagcagctagagcaggagaacaagactctggagcag
gaaagctcccagctggagaaagacaagaaacttctggagaaggaaaacaagcggctaagg
cagcaggccgagatccgtgactccaagctggatgacaacaaccagcggatctcctcattg
gagaaagagaatcgaaccatgggcaaggagatgatcttcttcagggactcctgcacaagg
gtcaaagacctggagcgagagaacaaggagctggtcaaacaggccaccattgataagaag
accctgattacactcagagaggagcttgtgagtgagaagctaaagactcagcagatgaat
aacgatctggagaaactgacccatgagctggagaaaattggactgaacaaggaaaggctg
ctgcttgacgagggctcagatgacaggtttaagctcctggaaaccaaactggagtcaact
ctgaaatcatctctggagattaaagaggagaagattgctgccctagaggccagactgcag
gagtcctcgaacctcaaccagcaacttcgccaggaactcaagacagtgaagaaaaactat
gaagcgctgcgtcagagggaggaggaggagaggatggtgcagagctcgccccctagagga
ggggaggaccctcagtctgtcagtaaatgggagaaggagagccatgaaaccaccagggaa
ctgctgaaagtcaaagacagactcattgaggtggagaggaataatgccacactgcaggct
gagaaggcagccctgaggagccagctcaaacaactggaaactcagagctccaacctgcag
gctcagatagtggccctgcagagacagaccgcctccttacaggagaacaatacaacactg
cagacacagaatgccaagctgcaggtggagaactctacactgagctcgcagagtgcagcc
ctcatggcccagaacgcccagctgcagagtcagcagagcagcgtagaaggcgagcgcgag
ggggcgctgaaggagaaagaagagctgagggccacctatgagctgcttctccgtgatcac
gagaagcttgcggcgctccatgagcggcaggcggctgagtacgaggccctgattggaaag
cacggcggcctgaagagctcccacaagagcctggagcagcagcacagggacttggaggac
aagtacaagcagctcctgcagaggaagggggacctggaggagctggagaaaaatctgaag
gagcagcaggaaaagatggcactggagaaccaaacacaccaagccacagctgaccagtgc
aaactgctcaaagaagaaaatgatagacttaatactacctatcgtcagctggtgagggac
aatgagaatctccagctggaccataagaacatgaagagccagttaaacagcgccaagctg
gagcagaccaaactggaggctgagttctctaaactgaaggagcagtaccaacagctggac
attacctccaccaaactcaccaaccagtgtgaattgttgagccagctgaaaggaaacctg
gaggaggagaatcgtcacctgttggaccagatccagactctgatgctacagaatcgcacg
ctgctggagcagaccatggagagcaaagatctgttccacgtagaacaaagacaatacata
gacaagctaaatgagctgaggagacagaaggagaagctagaggagaagatcatggaccag
tacaagttttacgacccctcacctccacgcaggcgtggcaactggatcactctgaagatg
aggaagctgatcaagccaaaaagccgagagaggatgcgttctctcacgctgactccatct
cgctcggagtctggcgacggctttctgacctttccccaggatagccaggacagctcgtcc
attggctctggctccaactcgctggacgacgcactccaacataagaggagctccaggagg
agagggcagcagtcccatgcccaagggcagggttcttccaatgctataaaaaggttgcct
ttcatgaggaacagatccaaggacaaagacaaggccaaggccatctaccggcgctccatg
tccatgaatgacctgctgcagactatggcagtggcaggcggtccaggggctcagtgggct
ggcagctccgagaacctagacggcgctgagggcggagacgccggcatgacaggcagaagc
aggcgcggcgggcaacgcatgaaggagctcgccttttccaccaacgccatcgactgtgcc
gccctcaccctgccctctgcagggcacagcagggccaagctccggcttcaagttaaagat
aatgtctcctgtgaggatgttgccggctcctcagatgaccccaagagtcaagccaccaga
ccctccagtctccatagcaacaggaccaccagtagtaatagtaacaataactcccacctc
acttctcctctggagggcaaaggcacactgaacggcagcctcagccgacctcacagtgag
agcagcggcgagttcagcctgagcttggaccaggacgtgtggtccagcagtggcagcagc
cccgtccagcagcccacctcctcgcgctcctcccaccagagccccctgcagctgcgcagg
tcgctcgacccatccagcgccacgggcagccccggccagacccagatcaggaagacagga
tccccaggcagcgaggtactttccctgcagcagttcctggatgagggtattgatcctgca
gagtctggcagtcaggagaacctcactgtagattctcctcgcctctccacttcctctgac
catgtgcagaaagagcgcacttccacaaagggccggggcatattacgctcttccagcggg
aaggcagcgccggtgagctccgaccgcccgccgagatcctcgggacaaccaggtcgccca
accctgcggaaggcggagagcacccgcgtgaaaggctccgtccccatccgctccagcctg
tcctcacagggcaaggccacgtccgtctcggaacgcctggactccgcttcctccacgctg
ccccgagccagcagcgtcatctccacggccgagggcaccacgcggcgcaccagcatccac
gacctgctctccaaggacaaccggcagcctgtgtcggtcgacgtctctcctcccgtcgcc
tccaccaaggctggggtgcgctcccagcctacacccagtgagtaccaccccatcagcacc
aacctaaaaggatcccttatcaccaccaccaccactcctctgcccaagtcactcagctta
ccttgccatagctcggaggatcctgacctctccaccctcgagtctttcctcggcccttcc
ttcactgtagactcagtgttcatggactccatctttagtgagtcagcaggcaaaaacctc
cccttcctgtctctaaaccccaccctagtcagcaatatcagtggtccacctgtaacaaat
aaaacctcacctgtcccacctgtcgcaaaccacatttccacccaaaaccagacccctcac
agccaatcaaacggccagatgaggtccagcccagccagtctgaaagagtatagggagggc
gttgaccccaatcttgtgaataatccagaccagtcactgagcccagaggacaaccagtct
ctgtggtacgagtatgggtgtgtgtga
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integrated database retrieval system