Lates calcarifer (barramundi perch): 108896265
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Entry
108896265 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: nephrocystin-1
KO
K19657
nephrocystin-1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108896265
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
108896265
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
hSH3
MukF_M
NOA36
Motif
Other DBs
NCBI-GeneID:
108896265
NCBI-ProteinID:
XP_018550817
UniProt:
A0AAJ7QA28
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Position
LG16_LG22:15073480..15080609
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AA seq
693 aa
AA seq
DB search
MPPKRKGPLQLVQREVDETKKQVDSLVKDVLSQGGSTEEAFRRCQELQMSAEETLRTLKK
LTKADELAPVGNYDQRKQEEERRLQNILERLNTLSLELSPPGPSTVAGSIVTVMMKMQYD
DDDDDDDADADNDGDEDKDERRAVKPPSMSDPRIYTVLSDFKGEQEGDLSVQRGEVLRII
RRTADGWWLAQDTKGNRGVVPKTYLKLGSGVDDEDDDNENEEEDDGDDEKDDDDENEEEE
EEDGEELTDDGDKPSGTSHSNWSTVRKALTEIDATDVLSAMGAIPSGFRPSTLNKLLVEE
GVTYRGSHHIQPELSQSQLSFKDLFLDPDTGRVRARQVRTCVCFTLWSCRMIPTPGVGVQ
VLSRHIRLCAFDGTQVLSNIHTVRATYNSKSPKTWSFSPRMTGILPTLLDGDCFLRCNSA
SPDLGILFELGVTFIRNSTGERGDLSCGWAFLKLTDDTGNPVPNRTYELPVNGGTPYERD
VAVEASVTRGSPAGVFQQMLQARRQPKLIVKLKSANSRTRVQLSLLPDTLLHCLSCVHLL
ALHRQLLADTLLMDRPTMQNADLICSPILSTFPVLLDQPDLLDVLRSAWLDAETNMSRAQ
KRDLSFLKQEFAKVYMSSAYFLLHSPRLPCLRWADPPSEEQRARVIYATLDSLKHTQHTT
SQSGGPEVFVDPMHSHLAFDVTELTFDLLHVAR
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgccaccaaagagaaagggacctttgcagcttgtccagagagaagtggacgaaaccaaa
aaacaggttgacagtctggtgaaggatgtgcttagtcagggcggatctactgaagaggca
tttcggagatgtcaagaactgcagatgtcggcagaggagacactacggacactgaagaaa
ctgacaaaggctgatgagctggctccggtgggaaactatgaccagaggaaacaggaagag
gagagacgactgcagaacatcttggagcgtctgaacacactctctctggagctttcacca
ccaggaccaagcactgttgcagggtctatagtgacagtgatgatgaagatgcagtacgat
gatgatgatgatgatgatgatgctgatgctgataacgatggtgatgaggataaagatgag
aggcgagctgtgaaaccgccatctatgtcagaccctcgcatatacacagtcctcagtgat
ttcaaaggagaacaggaaggagatttgtctgttcagaggggggaggtgttgaggattatc
aggaggacagcagatggatggtggctggctcaggacactaaaggcaacagaggagtggtt
ccaaaaacctacctgaagcttggctctggtgttgatgatgaagatgatgacaatgaaaat
gaagaggaagatgatggtgatgatgaaaaggacgatgatgatgaaaatgaggaggaggaa
gaagaagatggtgaagaactgactgatgatggagacaaaccgagtgggacttcacactcc
aactggtctacggtgaggaaggctctgactgagattgatgcaacagatgtgctctctgcc
atgggggccataccttcaggattcagaccgtcaactctcaataaactgctggtggaggaa
ggtgtaacatacagaggaagtcaccatattcagcctgagctcagccaatcacagctctcc
tttaaagacctctttctggacccagacactggcagagttcgtgctcggcaggttcggact
tgtgtttgtttcactttgtggagctgcaggatgattcccactcctggggttggtgttcag
gtcctcagcagacacatccgcctctgtgcctttgatggaactcaggtgttgagtaacatc
cacacagtgagggcaacctacaactccaaaagccccaagacctggagtttctctccaaga
atgacaggtatcctacccaccctcctggatggagactgtttcctgcgctgcaactctgca
tctcctgacctcggtatcctctttgaactgggagtcacctttatacggaattctacaggt
gagagaggagacctgagctgcggctgggctttcctcaaactgaccgatgacactggaaat
ccagtcccaaacaggacctatgagctgccagtgaacggtggcactccctatgagagagat
gtagcagtggaggcttcagtcacaagaggatctccagctggtgttttccagcagatgctt
caggccaggcggcagcccaaactgattgtaaagttgaaatcagccaacagcaggaccaga
gtgcagctcagtctcctcccagacactctgctgcactgtttgagctgtgtccatctgctg
gctctacatagacagctgctagctgacacactactgatggacaggcctactatgcagaat
gcagatctgatatgcagtcctatactttctaccttccctgtgctgttggaccaaccagac
ctgctggatgtcctaaggagtgcctggttggatgctgagaccaatatgagcagagcacag
aagagagacttgtcttttctgaaacaggagtttgctaaagtctacatgtcgtctgcctat
ttcctccttcactcacctcggctgccctgtcttcgctgggcagaccctccctcagaggag
cagcgggccagagtcatctacgccaccctggactctctcaaacacacccagcacaccacc
agccaatcaggaggtccagaggtctttgttgaccccatgcattctcatctcgcatttgat
gtcacagagttgacctttgacctcctgcatgtagcacggtaa
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