Lates calcarifer (barramundi perch): 108896445
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Entry
108896445 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: protein phosphatase 2, regulatory subunit B, gamma a
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03015
mRNA surveillance pathway
lcf04261
Adrenergic signaling in cardiomyocytes
lcf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108896445
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108896445
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
108896445
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108896445
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108896445
03036 Chromosome and associated proteins [BR:
lcf03036
]
108896445
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108896445
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108896445
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108896445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
108896445
NCBI-ProteinID:
XP_050926617
UniProt:
A0AAJ8B7I8
LinkDB
All DBs
Position
LG5:15504700..15513292
Genome browser
AA seq
453 aa
AA seq
DB search
MGEDAESPKINHTFLRDYVTEADVISTVEFNQTGDLLATGDKGGRVVIFQRETESKGESE
EVGDTGDSGEYNVYSTFQSHEPDFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIK
LWKVSERDKRPEGYNLKDEEGRLKDISTITSLQVPVLKPTDLMVEVRPRRVFANGHTYHV
NSISVNSDGETYLSADDLRINMWHLGITDRSFNIVDIKPANMEDLTEVITAAEFHPHHCH
LFVYSSSKGTLRLCDMRASALCDKHTKLFEEPEDPGSRSFFSEIISSVSDVKFSHSGRYL
LTRDYLTAKVWDLNMDKGPVETYQVHEYLRSKLCSLYENDCIFDKFECVWNSSDSVIMTG
AYNSFFRMFDRETGRGVTLEAWRESSKPRAVLRTRRVYTGGKRRRGDVGVDSLDFTKKIL
HMAWHPSENIIAIAATNNLYIFQDRVNPETQTQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggacgctgagagccccaaaatcaaccacaccttcctgcgagactacgtcact
gaagctgatgtcatctctacagtggaatttaaccagacaggggacctgctggccacggga
gataaaggtggccgagtggtcatcttccagagagagaccgagtctaaaggggagtcagag
gaggtgggggacacaggggactctggcgagtacaatgtctacagcacgttccagagccat
gagccggactttgactacctgaagagtctggagattgaagagaaaatcaacaagatcaga
tggctgccacagcagaacgcggcacatttcctcctttccaccaatgataagaccattaaa
ctgtggaaggtgagtgagagagacaagagaccagagggatacaacctgaaagatgaggag
ggacggctcaaggacatctctaccatcacctctctgcaggttccggtgctgaaacccaca
gatctgatggtggaggtccgtcctagacgagtgttcgccaacggacatacctaccatgtc
aactccatctcagtcaacagtgacggggagacgtacctatctgccgatgacctccgcatt
aatatgtggcacctgggcatcacggaccgcagcttcaatatcgtggacatcaagccagcc
aacatggaggatctgacggaggtgataacagcagcagagttccaccctcaccactgccac
ttgtttgtgtacagcagcagcaagggcaccctgcgcctctgtgacatgagagcctctgca
ctctgtgacaaacacaccaaattgtttgaggaacctgaagatccagggagccggtccttc
ttctcagagatcatttcctctgtgtcggacgtcaagttcagtcacagtggacgctatttg
ctgaccagagactacctcaccgccaaggtgtgggacctgaacatggacaagggccccgtg
gagacataccaggtccacgaatacctaaggagtaagctgtgttcgctctatgaaaacgac
tgcatctttgacaagtttgagtgtgtttggaacagctcagacagcgtgatcatgacaggg
gcgtacaacagcttcttccggatgtttgacagggaaactggacgaggcgtaaccctggag
gcgtggcgggaaagcagcaagcctcgggctgtgctgcggacccgccgcgtctacactggt
ggtaagcgtcgccgtggagatgtgggcgtcgatagcctggacttcacaaagaaaatcctg
cacatggcttggcacccgtctgagaacatcattgccatagcagccaccaacaacctgtac
atcttccaggatcgtgtcaaccctgagacgcagacgcagtga
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